Package: DEGreport
Version: 1.0.0
Date: 2014-09-04
Type: Package
Title: Report of DEG analysis
Description: Creation of a HTML report of differential expression
        analyses of count data. It integrates some of the code
        mentioned in DESeq2 and edgeR vignettes, and report a ranked
        list of genes according to the fold changes mean and
        variability for each selected gene.
biocViews: DifferentialExpression, Visualization, RNASeq,
        ReportWriting, GeneExpression
Suggests: knitr, biomaRt, RUnit, BiocStyle, BiocGenerics, BiocParallel
Depends: R (>= 3.0.0), rjags, quantreg
Imports: plyr, utils, ggplot2, Nozzle.R1, coda, edgeR
SystemRequirements: jags (>= 3.0.0)
Author: Lorena Pantano
Maintainer: Lorena Pantano <lorena.pantano@gmail.com>
License: GPL (>=2)
VignetteBuilder: knitr
Roxygen: list(wrap = TRUE)
Packaged: 2014-10-14 05:07:23 UTC; biocbuild
Built: R 3.1.1; ; 2014-10-14 07:55:05 UTC; windows
