CRISPRseek-package      Design of target-specific guide RNAs (gRNAs) in
                        CRISPR-Cas9, genome-editing systems
buildFeatureVectorForScoring
                        Build feature vectors
calculategRNAEfficiency
                        Calculate gRNA Efficiency
compare2Sequences       Compare 2 input sequences/sequence sets for
                        possible guide RNAs (gRNAs)
filterOffTarget         filter off targets and generate reports.
filtergRNAs             Filter gRNAs
findgRNAs               Find potential gRNAs
getOfftargetScore       Calculate score for each off target
offTargetAnalysis       Design of target-specific guide RNAs for
                        CRISPR-Cas9 system in one function
searchHits              Search for off targets
translatePattern        translate pattern from IUPAC Extended Genetic
                        Alphabet to regular expression
writeHits               Write the hits of sequence search to a file
