Package: CAGEr
Title: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing
        data for precise mapping of transcription start sites and
        promoterome mining
Version: 1.10.3
Date: 02-06-2015
Author: Vanja Haberle, Department of Biology, University of Bergen, Norway <vanja.haberle@gmail.com>
Maintainer: Vanja Haberle <vanja.haberle@gmail.com>
Imports: utils, Rsamtools, GenomicRanges, IRanges, data.table,
        beanplot, rtracklayer, som, VGAM
Depends: methods, R (>= 2.15.0), BSgenome
Suggests: BSgenome.Drerio.UCSC.danRer7, FANTOM3and4CAGE
Enhances: parallel
Description: Preprocessing of CAGE sequencing data, identification and normalization of transcription start sites and downstream analysis of transcription start sites clusters (promoters).
License: GPL-3
biocViews: Preprocessing, Sequencing, HighThroughputSequencing,
        Transcription, Clustering, Visualization
Collate: AllClasses.R GetMethods.R ImportFunctions.R ImportMethods.R
        CorrelationMethods.R ExportFunctions.R ExportMethods.R
        MergingMethods.R NormalizationFunctions.R
        NormalizationMethods.R ExpressionProfilingMethods.R
        ClusteringFunctions.R ClusteringMethods.R
        CumulativeDistributionFunctions.R
        CumulativeDistributionMethods.R QuantileWidthFunctions.R
        QuantileWidthMethods.R AggregationFunctions.R
        AggregationMethods.R ShiftingFunctions.R ShiftingMethods.R
Packaged: 2015-02-11 04:55:26 UTC; biocbuild
Built: R 3.1.2; ; 2015-02-11 07:18:32 UTC; windows
