# Agreement of Differential Expression Analysis

## Documentation for package ‘AGDEX’ version 1.14.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

AGDEX-package | Agreement of differential expression analysis
agdex | Agreement of Differential Expression Analysis
agdex.res | Saved result returned by agdex()
agdex.scatterplot | scatter plot of AGDEX result
get.gset.result.details | Extract gene-level details from gene-set results
gset.data | a sample gene-set data
human.data | Sample ExpressionSet object of human data
make.dex.set.object | Make a list object for function agdex()
map.data | Probe-set Mapping Data
mouse.data | Mouse Data
read.agdex.gset.details | read detailed results of gene-set analyses
read.agdex.result | Read the output file of agdex analysis
write.agdex.gset.details | write the output of get.gset.result.details to a tab-delimited text file.
write.agdex.result | Write the AGDEX results to output file