oneChannelGUI-package	oneChannelGUI-package
.annotation	oneChannelGUI
.myfindOverlaps	oneChannelGUI
.myrk	oneChannelGUI
AboutaffylmGUI	oneChannelGUI
AboutextendedaffylmGUI	oneChannelGUI
adaptorTrimm	adaptorTrimm
addAnnLib	oneChannelGUI
addga	oneChannelGUI
affyPLMHelp	oneChannelGUI
affyPlotMA	oneChannelGUI
annotateNGSeset	annotateNGSeset
aptFolder	oneChannelGUI
AptMidas	AptMidas
bayseqInterface	bayseqInterface
biomartFilter	biomartFilter
bofa	bofa
bowtieBuilt	bowtieBuilt
bowtieDownload	bowtieDownload
bowtieGenomes	bowtieGenomes
buildingLocalAnnotation	buildingLocalAnnotation
cdsDiff	tophat
changeMenu	oneChannelGUI
changes	oneChannelGUI
chimeraseq	oneChannelGUI
chooseEDir	oneChannelGUI
chooseInDir	tophat
chooseOutDir	tophat
chrLength	chrLength
closePdf	oneChannelGUI
colExtract	colExtract
combineGeoMSF	combineGeoMSF
combining2eSet	combining2eSet
ComputeContrasts	oneChannelGUI
ComputeLinearModelFit	oneChannelGUI
consistentFilters	consistentFilters
cosieWrapper	cosieWrapper
createDir	tophat
createGeoTarget	createGeoTarget
crosshybFilter	crosshybFilter
ctrtrtHeatmap	ctrtrtHeatmap
cuffdiff	tophat
cufflinks	tophat
cuffmerge	tophat
dabgFilter	oneChannelGUI
delete.ML	oneChannelGUI
deleteLocalData	oneChannelGUI
desCounts	oneChannelGUI
DESeqInterface	oneChannelGUI
desGenes	desGenes
dexCounts	dexCounts
dexExons	dexExons
dfMAplot	dfMAplot
EDAbetweenLane	oneChannelGUI
EDAbiasPlot	oneChannelGUI
EDAboxplot	oneChannelGUI
EDANtFreq	EDANtFreq
EDAplotQuality	EDAplotQuality
EDAreadNumber	EDAreadNumber
EDAwithinLane	oneChannelGUI
edgerInterface	edgerInterface
edgeRNorm	edgeRNorm
EG2probeset	EG2probeset
erankProdAltSpl	erankProdAltSpl
erankProdAltSplFilter	erankProdAltSplFilterl
eSet4meV	eSet4meV
exonContrasts	exonContrasts
exonScaffold	exonScaffold
exonsSpecific2as	exonsSpecific2as
exonTopTableExtract	exonTopTableExtract
exportFASTA	oneChannelGUI
ExportfeatureNames	oneChannelGUI
ExportNormalizedExpressionValues	oneChannelGUI
ExportNormalizedExpressionValues1	oneChannelGUI
extPckInfo	oneChannelGUI
extractAffyids	extractAffyids
extractmirTargets	extractmirTargets
fastQC	oneChannelGUI
filteringmiRtargets	filteringmiRtargets
filteringTable	filteringTable
fusionfilter	oneChannelGUI
fusionNS	oneChannelGUI
fusionpeptides	oneChannelGUI
geneDiff	tophat
geneExonLibs	geneExonLibs
genefilterHelp	oneChannelGUI
genomePlot	genomePlot
genomeStudioReformat	genomeStudioReformat
geoVSbioc	geoVSbioc
getNGSannotation	getNGSannotation
GetNormalizationMethod	oneChannelGUI
GOenrichment	GOenrichment
goseqInterface	oneChannelGUI
GOstatsHelp	oneChannelGUI
hsfa	hsfa
importfusions	oneChannelGUI
initialize.extAffylmGUI	oneChannelGUI
inspecting.one.splice.index	inspecting.one.splice.index
inspecting.splice.index	inspecting.splice.index
intensityFilter	intensityFilter
intronicBg	oneChannelGUI
IPAlistFilter	IPAlistFilter
iqrFilter	iqrFilter
isoDiff	tophat
javaFolder	oneChannelGUI
largedatasetNorm	oneChannelGUI
libraryFilesDir	oneChannelGUI
limma2paired	limma2paired
limmaExons	limmaExons
listFilter	listFilter
log2Conversion	oneChannelGUI
makeBED15	makeBED15
makeGCcontent	makeGCcontent
makeGeneScaffold	makeGeneScaffold
makeSam	makeSam
mapping2ensembl	mapping2ensembl
mapping2exon	mapping2exon
mapping2RefSeq	mapping2RefSeq
masigpro	masigpro
masigpro.edesign	masigpro.edesign
masigpro.view	masigpro.view
maSigProHelp	oneChannelGUI
metaArrayIC	metaArrayIC
metaArrayMerge	metaArrayMerge
meVDownload	oneChannelGUI
midasFilter	oneChannelGUI
miRNAbowtieRun	miRNAbowtieRun
ML.edesign	ML.edesign
mmfa	mmfa
mRNAbowtieRun	mRNAbowtieRun
mRNAmiRCor	mRNAmiRCor
myExpresso	myExpresso
ncHs.data	ncHs.data
ncMm.data	ncMm.data
ncRn.data	ncRn.data
ncScaffold	ncScaffold
NewLimmaFile	oneChannelGUI
NewLimmaFileNGS	oneChannelGUI
ngsperlDownload	oneChannelGUI
NGSreformat	NGSreformat
NormalizeNow	oneChannelGUI
normBoxplot	normBoxplot
ocPlotHist	ocPlotHist
ocPlotPCA	ocPlotPCA
oneChannelGUI	oneChannelGUI-package
oneChannelGUI.start	oneChannelGUI
oneChannelGUIHelp	oneChannelGUI
OpenAFile	oneChannelGUI
OpenAGeoFile	oneChannelGUI
OpenALimmaFile	oneChannelGUI
OpenBeadStudioFiles	OpenBeadStudioFiles
OpenCDFandTargetsfiles	oneChannelGUI
OpenExonandTargetsfiles	oneChannelGUI
OpenExonFile	oneChannelGUI
OpenExonProbeFile	oneChannelGUI
OpenGeoFile	oneChannelGUI
OpenGeoFiles	oneChannelGUI
OpenLargeFile	oneChannelGUI
OpenLargefiles	OpenLargefiles
OpenLimmaFile	oneChannelGUI
OpenmiRanalyserfiles	oneChannelGUI
OpenmiRBam	oneChannelGUI
OpenmiRExpress	oneChannelGUI
OpenmiRProfiles	oneChannelGUI
OpenmiRShrimp	oneChannelGUI
OpenmRNABam	OpenmRNABam
OpenNgsfiles	oneChannelGUI
openPdf	oneChannelGUI
pamrHelp	oneChannelGUI
pdmclassHelp	oneChannelGUI
plierToZero	plierToZero
plotcoverage	oneChannelGUI
plotDE.exons	oneChannelGUI
plotGO	plotGO
PlotOptionsv1	PlotOptionsv1
plotVariantSI	plotVariantSI
qcMDS	qcMDS
rankingConversion	rankingConversion
rankProd	rankProd
RankProdHelp	oneChannelGUI
rawBoxplotPN	rawBoxplotPN
rawpCheck	rawpCheck
Reads2logos	Reads2logos
recoverUnfiltered	oneChannelGUI
refiningPeaks	refiningPeaks
reformatGdl	reformatGdl
refseqDownload	refseqDownload
retrieveMirTargets	retrieveMirTargets
retrievePSRseq	retrievePSRseq
retrievePSRseq1gid	retrievePSRseq1gid
reviqrFilter	reviqrFilter
RmiRInterface	RmiRInterface
rnfa	rnfa
runningJetta	runningJetta
sample.size.evaluation	sample.size.evaluation
sample.size.evaluation1	sample.size.evaluation1
SaveAsLimmaFile	oneChannelGUI
SaveLimmaFile	oneChannelGUI
setBinDir	oneChannelGUI
SetED	oneChannelGUI
showDataset	showDataset
showTopTable	showTopTable
siggenes	siggenes
siggenesHelp	oneChannelGUI
simFilter	simFilter
sizepowerHelp	oneChannelGUI
spliceIndex	spliceIndex
ssizeHelp	oneChannelGUI
standAloneAddingAnnotation	standAloneAddingAnnotation
standAloneBuildingLocalAnnotation	standAloneBuildingLocalAnnotation
startmeV	oneChannelGUI
targetWidget	targetWidget
templA	templA
tophat	tophat
tophatrun	oneChannelGUI
topTable.exons	topTable.exons
topTable.genes	oneChannelGUI
trainTest	trainTest
tuxedoMenu	oneChannelGUI
tuxedoSetup	tuxedoSetup
updateLibs	updateLibs
variantExons	variantExons
variantSI	variantSI
VennDiagram	VennDiagram
whichKindOfArray	oneChannelGUI
wrapNGS	wrapNGS
wrapScaffold	wrapScaffold
