SomatiCA-package	SomatiCA-package
admixtureRate	admixtureRate
collapse	collapse
copynumberCorrected	copynumberCorrected
denoise	denoise
GCbiasRemoval	GCbiasRemoval
GCcontent	GCcontent
GCcount	GCcount
larsCBSsegment	larsCBSsegment
MergeSegment	MergeSegment
plotSegment	plotSegment
plotSubclonality	plotSubclonality
refineSegment	refineSegment
segmentGCbiasRemoval	segmentGCbiasRemoval
segwithratio	segwithratio
SomatiCA	SomatiCA-package
SomatiCAFormat	SomatiCAFormat-methods
SomatiCAFormat,character-method	SomatiCAFormat-methods
SomatiCAFormat,data.frame-method	SomatiCAFormat-methods
SomatiCAFormat,GRanges-method	SomatiCAFormat-methods
SomatiCAFormat-methods	SomatiCAFormat-methods
SomatiCApipe	SomatiCApipe
SomatiCAUsersGuide	SomatiCAUsersGuide
somaticRatio	somaticRatio
subclonality	subclonality
