Package: QuasR
Type: Package
Title: Quantify and Annotate Short Reads in R
Version: 1.6.2
Date: 2014-11-03
Author: Anita Lerch, Dimos Gaiditzis and Michael Stadler
Maintainer: Michael Stadler <michael.stadler@fmi.ch>
Depends: parallel, GenomicRanges (>= 1.13.3), Rbowtie
Imports: methods, zlibbioc, BiocGenerics, S4Vectors, IRanges,
        BiocInstaller, Biobase, Biostrings, GenomicRanges, BSgenome,
        Rsamtools (>= 1.13.1), GenomicFeatures (>= 1.17.13), ShortRead
        (>= 1.19.1), GenomicAlignments
Suggests: Rsamtools, rtracklayer, Gviz, RUnit, BiocStyle
LinkingTo: Rsamtools
Description: This package provides a framework for the quantification
        and analysis of Short Reads. It covers a complete workflow
        starting from raw sequence reads, over creation of alignments
        and quality control plots, to the quantification of genomic
        regions of interest.
License: GPL-2
biocViews: Genetics, Preprocessing, Sequencing, ChIPSeq, RNASeq,
        MethylSeq
Packaged: 2014-11-06 03:30:47 UTC; biocbuild
Built: R 3.1.2; x86_64-apple-darwin13.4.0; 2014-11-06 12:41:46 UTC; unix
