# NGScopy: Detection of copy number variations in next generation sequencing

## Documentation for package ‘NGScopy’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

NGScopy-package | NGScopy: Detection of copy number variations in next generation sequencing
df.to.gr | Convert a data.frame to a GRanges object
help_segmtype | Get help for segmentation functions
NGScopy | Detection of copy number variations in next generation sequencing (NGS)
NGScopy-class | Detection of copy number variations in next generation sequencing (NGS)
ngscopy_cmdline_example | Run an example of NGScopy at UNIX-like command line
ngscopy_unittest | A wrapper to run unit testing of NGScopy
parse_segmtype | Parse the type of segmentation
read_regions | Read regions from a data.frame, a file or a connection.