Package: GenomicRanges
Title: Representation and manipulation of genomic intervals
Description: The ability to efficiently represent and manipulate genomic
	annotations and alignments is playing a central role when it comes
	to analyze high-throughput sequencing data (a.k.a. NGS data).
	The package defines general purpose containers for storing genomic
	intervals. Specialized containers for representing and manipulating
	short alignments against a reference genome are defined in the
	GenomicAlignments package.
Version: 1.18.4
Author: P. Aboyoun, H. Pages and M. Lawrence
Maintainer: Bioconductor Package Maintainer <maintainer@bioconductor.org>
biocViews: Genetics, Infrastructure, Sequencing, Annotation, Coverage,
        GenomeAnnotation
Depends: R (>= 2.10), methods, BiocGenerics (>= 0.11.3), S4Vectors (>=
        0.2.3), IRanges (>= 1.99.28), GenomeInfoDb (>= 1.1.20)
Imports: utils, stats, XVector
LinkingTo: S4Vectors, IRanges
Suggests: AnnotationDbi (>= 1.21.1), AnnotationHub, BSgenome,
        BSgenome.Hsapiens.UCSC.hg19, BSgenome.Scerevisiae.UCSC.sacCer2,
        Biostrings (>= 2.25.3), Rsamtools (>= 1.13.53),
        GenomicAlignments, rtracklayer, KEGG.db, KEGGgraph,
        GenomicFeatures, TxDb.Dmelanogaster.UCSC.dm3.ensGene,
        TxDb.Hsapiens.UCSC.hg19.knownGene,
        TxDb.Athaliana.BioMart.plantsmart22, org.Sc.sgd.db,
        VariantAnnotation, edgeR, DESeq, DEXSeq, pasilla,
        pasillaBamSubset, RUnit, digest, BiocStyle
License: Artistic-2.0
Collate: utils.R phicoef.R transcript-utils.R constraint.R
        makeSeqnameIds.R strand-utils.R range-squeezers.R
        GenomicRanges-class.R GRanges-class.R
        DelegatingGenomicRanges-class.R GIntervalTree-class.R
        GenomicRanges-comparison.R GenomicRangesList-class.R
        GRangesList-class.R makeGRangesFromDataFrame.R tileGenome.R
        SummarizedExperiment-class.R
        SummarizedExperiment-rowData-methods.R RangedData-methods.R
        intra-range-methods.R inter-range-methods.R coverage-methods.R
        setops-methods.R findOverlaps-methods.R
        findOverlaps-GIntervalTree-methods.R nearest-methods.R
        mapCoords-methods.R tile-methods.R test_GenomicRanges_package.R
        zzz.R
Packaged: 2015-01-07 02:18:06 UTC; biocbuild
Built: R 3.1.2; x86_64-apple-darwin13.4.0; 2015-01-07 12:23:09 UTC; unix
