# GO-terms Semantic Similarity Measures

## Documentation for package ‘GOSemSim’ version 1.24.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

GOSemSim-package | Gene Ontology-based Sematic Similarity Measures
clusterSim | Semantic Similarity Between Two Gene Clusters
combineScores | combining similarity matrix to similarity score
geneSim | Semantic Similarity Between two Genes
getDb | getDb
getSupported_Org | getSupported_Org
GOSemSim | Gene Ontology-based Sematic Similarity Measures
goSim | Semantic Similarity Between Two GO Terms
IC | Information content of GO terms
infoContentMethod | information content based methods
Info_Contents_anopheles_BP | Information content of GO terms
Info_Contents_anopheles_CC | Information content of GO terms
Info_Contents_anopheles_MF | Information content of GO terms
Info_Contents_arabidopsis_BP | Information content of GO terms
Info_Contents_arabidopsis_CC | Information content of GO terms
Info_Contents_arabidopsis_MF | Information content of GO terms
Info_Contents_bovine_BP | Information content of GO terms
Info_Contents_bovine_CC | Information content of GO terms
Info_Contents_bovine_MF | Information content of GO terms
Info_Contents_canine_BP | Information content of GO terms
Info_Contents_canine_CC | Information content of GO terms
Info_Contents_canine_MF | Information content of GO terms
Info_Contents_chicken_BP | Information content of GO terms
Info_Contents_chicken_CC | Information content of GO terms
Info_Contents_chicken_MF | Information content of GO terms
Info_Contents_chimp_BP | Information content of GO terms
Info_Contents_chimp_CC | Information content of GO terms
Info_Contents_chimp_MF | Information content of GO terms
Info_Contents_coelicolor_BP | Information content of GO terms
Info_Contents_coelicolor_CC | Information content of GO terms
Info_Contents_coelicolor_MF | Information content of GO terms
Info_Contents_ecolik12_BP | Information content of GO terms
Info_Contents_ecolik12_CC | Information content of GO terms
Info_Contents_ecolik12_MF | Information content of GO terms
Info_Contents_ecsakai_BP | Information content of GO terms
Info_Contents_ecsakai_CC | Information content of GO terms
Info_Contents_ecsakai_MF | Information content of GO terms
Info_Contents_fly_BP | Information content of GO terms
Info_Contents_fly_CC | Information content of GO terms
Info_Contents_fly_MF | Information content of GO terms
Info_Contents_gondii_BP | Information content of GO terms
Info_Contents_gondii_CC | Information content of GO terms
Info_Contents_gondii_MF | Information content of GO terms
Info_Contents_human_BP | Information content of GO terms
Info_Contents_human_CC | Information content of GO terms
Info_Contents_human_MF | Information content of GO terms
Info_Contents_malaria_BP | Information content of GO terms
Info_Contents_malaria_CC | Information content of GO terms
Info_Contents_malaria_MF | Information content of GO terms
Info_Contents_mouse_BP | Information content of GO terms
Info_Contents_mouse_CC | Information content of GO terms
Info_Contents_mouse_MF | Information content of GO terms
Info_Contents_pig_BP | Information content of GO terms
Info_Contents_pig_CC | Information content of GO terms
Info_Contents_pig_MF | Information content of GO terms
Info_Contents_rat_BP | Information content of GO terms
Info_Contents_rat_CC | Information content of GO terms
Info_Contents_rat_MF | Information content of GO terms
Info_Contents_rhesus_BP | Information content of GO terms
Info_Contents_rhesus_CC | Information content of GO terms
Info_Contents_rhesus_MF | Information content of GO terms
Info_Contents_worm_BP | Information content of GO terms
Info_Contents_worm_CC | Information content of GO terms
Info_Contents_worm_MF | Information content of GO terms
Info_Contents_xenopus_BP | Information content of GO terms
Info_Contents_xenopus_CC | Information content of GO terms
Info_Contents_xenopus_MF | Information content of GO terms
Info_Contents_yeast_BP | Information content of GO terms
Info_Contents_yeast_CC | Information content of GO terms
Info_Contents_yeast_MF | Information content of GO terms
Info_Contents_zebrafish_BP | Information content of GO terms
Info_Contents_zebrafish_CC | Information content of GO terms
Info_Contents_zebrafish_MF | Information content of GO terms
loadGOMap | loadGOMap
loadICdata | Load IC data
mclusterSim | Pairwise Semantic Similarities for a List of Gene Clusters
mgeneSim | Pairwise Semantic Similarity for a List of Genes
mgoSim | Semantic Similarity Between two GO terms lists
termSim | termSim
wangMethod | wangMethod