Package: BiSeq
Type: Package
Title: Processing and analyzing bisulfite sequencing data
Version: 1.6.0
Date: 2014-07-21
Author: Katja Hebestreit, Hans-Ulrich Klein
Maintainer: Katja Hebestreit <katjah@stanford.edu>
Depends: R (>= 2.15.2), methods, S4Vectors, IRanges (>= 1.17.24),
        GenomicRanges, Formula
Imports: methods, BiocGenerics, Biobase, S4Vectors, IRanges,
        GenomicRanges, rtracklayer, parallel, betareg, lokern, Formula,
        globaltest
Description: The BiSeq package provides useful classes and functions to
        handle and analyze targeted bisulfite sequencing (BS) data such
        as reduced-representation bisulfite sequencing (RRBS) data. In
        particular, it implements an algorithm to detect differentially
        methylated regions (DMRs). The package takes already aligned BS
        data from one or multiple samples.
License: LGPL-3
biocViews: Genetics, Sequencing, MethylSeq, DNAMethylation
Packaged: 2014-10-14 02:40:08 UTC; biocbuild
Built: R 3.1.1; ; 2014-10-14 10:43:41 UTC; unix
