# Multivariate and directional gene set testing

## Documentation for package ‘mvGST’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

mvGST-package | Multivariate and directional gene set testing
changeTO10 | mvGST Other Functions
combinePvalues | mvGST Other Functions
convertPvalues | mvGST Other Functions
cut | mvGST Other Functions
distributeWeight | mvGST Other Functions
fillInList | mvGST Other Functions
finalResults | mvGST Other Functions
geneNameConvertRows | mvGST Other Functions
generateGeneSets | mvGST Other Functions
getAncestorsAndOffspring | mvGST Other Functions
getCurrentChildren | mvGST Other Functions
go2GeneSet | mvGST Other Functions
go2Profile | Creates tables showing profiles of specific gene sets.
graphCell | Makes a GO graph highlighting the GO terms in the selected cell of the results table.
hartung | mvGST Other Functions
interactiveGraph | mvGST Other Functions
makeCoherent | mvGST Other Functions
method2 | mvGST Other Functions
method3 | mvGST Other Functions
method4 | mvGST Other Functions
mvGST | Multivariate and directional gene set testing
mvGSTObject | mvGST Other Functions
mvGSTsamples | mvGSTsamples: Sample objects for the mvGST package
mvSort | mvGST Other Functions
obatoclax.mvGST | mvGSTsamples: Sample objects for the mvGST package
obatoclax.pvals | mvGSTsamples: Sample objects for the mvGST package
oneSideBYAdjust | mvGST Other Functions
p.adjust.SFL | Short Focus Level adjustment
parathyroid.mvGST | mvGSTsamples: Sample objects for the mvGST package
parathyroid.pvals | mvGSTsamples: Sample objects for the mvGST package
pickOut | Returns gene sets in a cell of the 'results.table'.
print.mvGST | mvGST Other Functions
print.summary.mvGST | mvGST Other Functions
profileCombine | mvGST Other Functions
profiles | mvGST Other Functions
profileTable | Creates a table of significance profiles of gene sets from given matrix of p-values
separate | mvGST Other Functions
summary.mvGST | mvGST Other Functions
tableColumns | mvGST Other Functions
turnListAround | mvGST Other Functions