Package: hiReadsProcessor
Title: Functions to process LM-PCR reads from 454/Illumina data.
Version: 1.0.0
Date: 2014-08-25
Author: Nirav V Malani <malnirav@gmail.com>
Maintainer: Nirav V Malani <malnirav@gmail.com>
Description: hiReadsProcessor contains set of functions which allow
        users to process LM-PCR products sequenced using any platform.
        Given an excel/txt file containing parameters for
        demultiplexing and sample metadata, the functions automate
        trimming of adaptors and identification of the genomic product.
        Genomic products are further processed for QC and abundance
        quantification.
Depends: Biostrings, GenomicAlignments, xlsx, BiocParallel,
        hiAnnotator, R (>= 3.0)
Imports: sonicLength, plyr
License: GPL-3
VignetteBuilder: knitr
Suggests: knitr, testthat, BiocGenerics, rSFFreader
biocViews: Sequencing, Preprocessing
LazyLoad: yes
SystemRequirements: BLAT, JRE, UCSC hg18 in 2bit format for BLAT
Packaged: 2014-10-14 04:15:19 UTC; biocbuild
Built: R 3.1.1; ; 2014-10-14 14:29:44 UTC; unix
