Package: beadarray
Title: Quality assessment and low-level analysis for Illumina BeadArray
        data
Version: 2.16.0
Date: 2014-09-11
Author: Mark Dunning, Mike Smith, Jonathan Cairns, Andy Lynch, Matt Ritchie
Maintainer: Mark Dunning <Mark.Dunning@cruk.cam.ac.uk>
Description: The package is able to read bead-level data (raw TIFFs and text files) output by BeadScan as well as bead-summary data from BeadStudio.  Methods for quality assessment and low-level analysis are provided.
Depends: R (>= 2.13.0), BiocGenerics (>= 0.3.2), Biobase (>= 2.17.8),
        methods, ggplot2
Imports: BeadDataPackR, limma, AnnotationDbi, stats4, reshape2,
        GenomicRanges, IRanges, illuminaio
Suggests: lumi, vsn, affy, hwriter, beadarrayExampleData,
        illuminaHumanv3.db, gridExtra, BiocStyle,
        TxDb.Hsapiens.UCSC.hg19.knownGene, ggbio, Nozzle.R1, knitr
License: GPL-2
biocViews: Microarray, OneChannel, QualityControl, Preprocessing
LazyData: yes
VignetteBuilder: knitr
Packaged: 2014-10-14 00:54:23 UTC; biocbuild
Built: R 3.1.1; x86_64-apple-darwin10.8.0; 2014-10-14 14:10:55 UTC; unix
