# Manipulating and exploring protein and proteomics data

## Documentation for package ‘Pbase’ version 0.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

aa | The 'Proteins' Class for Proteomics Data And Meta-Data
aa-method | The 'Proteins' Class for Proteomics Data And Meta-Data
acols | The 'Proteins' Class for Proteomics Data And Meta-Data
addIdentificationData-method | The 'Proteins' Class for Proteomics Data And Meta-Data
ametadata | The 'Proteins' Class for Proteomics Data And Meta-Data
ametadata-method | The 'Proteins' Class for Proteomics Data And Meta-Data
avarLabels | The 'Proteins' Class for Proteomics Data And Meta-Data
avarLabels-method | The 'Proteins' Class for Proteomics Data And Meta-Data
class:Proteins | The 'Proteins' Class for Proteomics Data And Meta-Data
cleave-method | The 'Proteins' Class for Proteomics Data And Meta-Data
length-method | The 'Proteins' Class for Proteomics Data And Meta-Data
metadata-method | The 'Proteins' Class for Proteomics Data And Meta-Data
p | An 'Proteins' object and its MSMS spectra
pcols | The 'Proteins' Class for Proteomics Data And Meta-Data
pfeatures | The 'Proteins' Class for Proteomics Data And Meta-Data
pfeatures-method | The 'Proteins' Class for Proteomics Data And Meta-Data
pfilter | The 'Proteins' Class for Proteomics Data And Meta-Data
pfilter-method | The 'Proteins' Class for Proteomics Data And Meta-Data
plot-method | The 'Proteins' Class for Proteomics Data And Meta-Data
pmetadata | The 'Proteins' Class for Proteomics Data And Meta-Data
pmetadata-method | The 'Proteins' Class for Proteomics Data And Meta-Data
pms | An 'Proteins' object and its MSMS spectra
Pparams | Class '"Pparams"'
Pparams-class | Class '"Pparams"'
pranges | The 'Proteins' Class for Proteomics Data And Meta-Data
pranges-method | The 'Proteins' Class for Proteomics Data And Meta-Data
proteinCoverage | The 'Proteins' Class for Proteomics Data And Meta-Data
proteinCoverage-method | The 'Proteins' Class for Proteomics Data And Meta-Data
Proteins | The 'Proteins' Class for Proteomics Data And Meta-Data
Proteins-class | The 'Proteins' Class for Proteomics Data And Meta-Data
Proteins-method | The 'Proteins' Class for Proteomics Data And Meta-Data
proteotypic | The 'Proteins' Class for Proteomics Data And Meta-Data
proteotypic-method | The 'Proteins' Class for Proteomics Data And Meta-Data
pvarLabels | The 'Proteins' Class for Proteomics Data And Meta-Data
pvarLabels-method | The 'Proteins' Class for Proteomics Data And Meta-Data
rmEmptyRanges | The 'Proteins' Class for Proteomics Data And Meta-Data
seqnames-method | The 'Proteins' Class for Proteomics Data And Meta-Data
show-method | Class '"Pparams"'
show-method | The 'Proteins' Class for Proteomics Data And Meta-Data
[-method | The 'Proteins' Class for Proteomics Data And Meta-Data
[[-method | The 'Proteins' Class for Proteomics Data And Meta-Data