Package: GeneNetworkBuilder
Type: Package
Version: 1.8.0
Date: 2014-07-22
Title: Build Regulatory Network from ChIP-chip/ChIP-seq and Expression
        Data
Authors@R: c(person("Jianhong Ou", "Developer", role = c("aut", "cre"),
        email = "jianhong.ou@umassmed.edu"), person("Lihua Julie Zhu",
        "Developer", role = "aut", email = "Julie.Zhu@umassmed.edu"))
Author: Jianhong Ou and Lihua Julie Zhu
Maintainer: Jianhong Ou <jianhong.ou@umassmed.edu>
Imports: plyr, graph
Depends: R (>= 2.15.1), Rcpp (>= 0.9.13), graph
Suggests: RUnit, BiocGenerics, Rgraphviz, XML, RCytoscape, RBGL
LinkingTo: Rcpp
Description: Appliation for discovering direct or indirect targets of
        transcription factors using ChIP-chip or ChIP-seq, and
        microarray or RNA-seq gene expression data. Inputting a list of
        genes of potential targets of one TF from ChIP-chip or
        ChIP-seq, and the gene expression results, GeneNetworkBuilder
        generates a regulatory network of the TF.
License: GPL (>= 2)
Lazyload: yes
biocViews: Sequencing, Microarray, GraphAndNetwork
Packaged: 2014-10-14 02:51:07 UTC; biocbuild
Built: R 3.1.1; x86_64-apple-darwin10.8.0; 2014-10-14 14:25:05 UTC; unix
