Extracting raw SNPs from /home/hpages/dbSNP/downloads/ds_flat_ch1.flat ...
Extracting raw SNPs from /home/hpages/dbSNP/downloads/ds_flat_ch2.flat ...
Extracting raw SNPs from /home/hpages/dbSNP/downloads/ds_flat_ch3.flat ...
Extracting raw SNPs from /home/hpages/dbSNP/downloads/ds_flat_ch4.flat ...
Extracting raw SNPs from /home/hpages/dbSNP/downloads/ds_flat_ch5.flat ...
Extracting raw SNPs from /home/hpages/dbSNP/downloads/ds_flat_ch6.flat ...
Extracting raw SNPs from /home/hpages/dbSNP/downloads/ds_flat_ch7.flat ...
Extracting raw SNPs from /home/hpages/dbSNP/downloads/ds_flat_ch8.flat ...
Extracting raw SNPs from /home/hpages/dbSNP/downloads/ds_flat_ch9.flat ...
Extracting raw SNPs from /home/hpages/dbSNP/downloads/ds_flat_ch10.flat ...
Extracting raw SNPs from /home/hpages/dbSNP/downloads/ds_flat_ch11.flat ...
Extracting raw SNPs from /home/hpages/dbSNP/downloads/ds_flat_ch12.flat ...
Extracting raw SNPs from /home/hpages/dbSNP/downloads/ds_flat_ch13.flat ...
Extracting raw SNPs from /home/hpages/dbSNP/downloads/ds_flat_ch14.flat ...
Extracting raw SNPs from /home/hpages/dbSNP/downloads/ds_flat_ch15.flat ...
Extracting raw SNPs from /home/hpages/dbSNP/downloads/ds_flat_ch16.flat ...
Extracting raw SNPs from /home/hpages/dbSNP/downloads/ds_flat_ch17.flat ...
Extracting raw SNPs from /home/hpages/dbSNP/downloads/ds_flat_ch18.flat ...
Extracting raw SNPs from /home/hpages/dbSNP/downloads/ds_flat_ch19.flat ...
Extracting raw SNPs from /home/hpages/dbSNP/downloads/ds_flat_ch20.flat ...
Extracting raw SNPs from /home/hpages/dbSNP/downloads/ds_flat_ch21.flat ...
Extracting raw SNPs from /home/hpages/dbSNP/downloads/ds_flat_ch22.flat ...
Extracting raw SNPs from /home/hpages/dbSNP/downloads/ds_flat_chX.flat ...
Extracting raw SNPs from /home/hpages/dbSNP/downloads/ds_flat_chY.flat ...

R version 2.7.0 Under development (unstable) (2008-01-21 r44087)
Copyright (C) 2008 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source('/home/hpages/svn/pilot/herve/SNPlocs/SNPlocs.Hsapiens.dbSNP.20071016/inst/tools/utils.R'); loadAndserializeSNPs('/home/hpages/dbSNP/tmp_files', '1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Y')
Loading raw SNPs for chr1 ...
Dropping 7 inconsistent or redundant SNPs ...
Saving chr1_snplocs (data frame with 694706 SNPs) ...
Loading raw SNPs for chr2 ...
Dropping 6 inconsistent or redundant SNPs ...
Saving chr2_snplocs (data frame with 673378 SNPs) ...
Loading raw SNPs for chr3 ...
Dropping 25 inconsistent or redundant SNPs ...
Saving chr3_snplocs (data frame with 563477 SNPs) ...
Loading raw SNPs for chr4 ...
Dropping 3 inconsistent or redundant SNPs ...
Saving chr4_snplocs (data frame with 580621 SNPs) ...
Loading raw SNPs for chr5 ...
Dropping 18 inconsistent or redundant SNPs ...
Saving chr5_snplocs (data frame with 512873 SNPs) ...
Loading raw SNPs for chr6 ...
Dropping 44 inconsistent or redundant SNPs ...
Saving chr6_snplocs (data frame with 583553 SNPs) ...
Loading raw SNPs for chr7 ...
Dropping 16 inconsistent or redundant SNPs ...
Saving chr7_snplocs (data frame with 480854 SNPs) ...
Loading raw SNPs for chr8 ...
Dropping 12 inconsistent or redundant SNPs ...
Saving chr8_snplocs (data frame with 441037 SNPs) ...
Loading raw SNPs for chr9 ...
Dropping 10 inconsistent or redundant SNPs ...
Saving chr9_snplocs (data frame with 377806 SNPs) ...
Loading raw SNPs for chr10 ...
Dropping 15 inconsistent or redundant SNPs ...
Saving chr10_snplocs (data frame with 449351 SNPs) ...
Loading raw SNPs for chr11 ...
Dropping 13 inconsistent or redundant SNPs ...
Saving chr11_snplocs (data frame with 451602 SNPs) ...
Loading raw SNPs for chr12 ...
Dropping 29 inconsistent or redundant SNPs ...
Saving chr12_snplocs (data frame with 423248 SNPs) ...
Loading raw SNPs for chr13 ...
Dropping 41 inconsistent or redundant SNPs ...
Saving chr13_snplocs (data frame with 330591 SNPs) ...
Loading raw SNPs for chr14 ...
Dropping 2 inconsistent or redundant SNPs ...
Saving chr14_snplocs (data frame with 265727 SNPs) ...
Loading raw SNPs for chr15 ...
Dropping 9 inconsistent or redundant SNPs ...
Saving chr15_snplocs (data frame with 242224 SNPs) ...
Loading raw SNPs for chr16 ...
Dropping 4 inconsistent or redundant SNPs ...
Saving chr16_snplocs (data frame with 256249 SNPs) ...
Loading raw SNPs for chr17 ...
Dropping 8 inconsistent or redundant SNPs ...
Saving chr17_snplocs (data frame with 224648 SNPs) ...
Loading raw SNPs for chr18 ...
Dropping 5 inconsistent or redundant SNPs ...
Saving chr18_snplocs (data frame with 237953 SNPs) ...
Loading raw SNPs for chr19 ...
Dropping 9 inconsistent or redundant SNPs ...
Saving chr19_snplocs (data frame with 190287 SNPs) ...
Loading raw SNPs for chr20 ...
Dropping 1 inconsistent or redundant SNPs ...
Saving chr20_snplocs (data frame with 253011 SNPs) ...
Loading raw SNPs for chr21 ...
Dropping 7 inconsistent or redundant SNPs ...
Saving chr21_snplocs (data frame with 118154 SNPs) ...
Loading raw SNPs for chr22 ...
Dropping 12 inconsistent or redundant SNPs ...
Saving chr22_snplocs (data frame with 149655 SNPs) ...
Loading raw SNPs for chrX ...
Dropping 9 inconsistent or redundant SNPs ...
Saving chrX_snplocs (data frame with 308818 SNPs) ...
Loading raw SNPs for chrY ...
Saving chrY_snplocs (data frame with 6054 SNPs) ...
> 
