Package: oneChannelGUI
Version: 1.18.7
Date: 18 July 2011
Title: This package extends the capabilities of affylmGUI graphical
        interface. Affymetrix 3' IVT, gene an exon arrays are actually
        implemented togheter with Illumina, GEO matrix series files and
        tab delimited files. Next Generation Sequencing secondary
        analysis for ncRNA quantification is also available.
Author: Raffale A Calogero, Bioinformatics and Genomics Unit, Dept. of
        Clinical and Biological Sciences Torino (Italy)
Maintainer: Raffaele A Calogero <raffaele.calogero@unito.it>
Depends: Biobase, limma, affylmGUI, tkWidgets, GOstats, AnnotationDbi,
        preprocessCore, IRanges, edgeR, baySeq, girafe
Suggests: annotate, genefilter, maSigPro, pamr, pdmclass, ChIPpeakAnno,
        chipseq, BSgenome, Rgraphviz, affy ,annaffy, affyPLM, multtest,
        ssize, sizepower, siggenes, RankProd, org.Hs.eg.db,
        org.Mm.eg.db, org.Rn.eg.db, metaArray, MergeMaid, biomaRt,
        GenomeGraphs,AffyCompatible, Biostrings, IRanges, rtracklayer,
        Genominator, hugene10sttranscriptcluster.db,
        mogene10sttranscriptcluster.db, ragene10sttranscriptcluster.db,
        HuExExonProbesetLocation, MoExExonProbesetLocation,
        RaExExonProbesetLocation, snow, RmiR, RmiR.Hs.miRNA
Description: This package was developed to simplify the use of
        Bioconductor tools for beginners having limited or no
        experience in writing R code. This library provides a graphical
        interface for microarray gene and exon level analysis as well
        as basic secondary analysis of NGS data for ncRNA
        quantification.
biocViews: HighThroughputSequencing, RNAseq, Microarray, OneChannel,
        DataImport, QualityControl, Preprocessing, Statistics,
        DifferentialExpression, GUI, MultipleComparisons
License: The Artistic License, Version 2.0
URL: http://www.bioinformatica.unito.it/oneChannelGUI/
Packaged: 2011-07-19 22:06:03 UTC; biocbuild
Built: R 2.13.0; ; 2011-07-20 05:00:13 UTC; windows
