CHANGES IN VERSION 1.0.7
-------------------------
 o removed link to proteomics sig list <2011-09-20 Tue>
 o removed url from DESCRIPTION <2011-09-20 Tue>

CHANGES IN VERSION 1.0.3
-------------------------
 o added MassSpectrometry to biocViews <2011-05-28 Sat>

CHANGES IN VERSION 1.0.2
-------------------------
 o added link to bioc-sig-proteomics <2011-05-06 Fri>

CHANGES IN VERSION 0.99.4
-------------------------
 o removed pgfSweave from Suggests field <2011-04-04 Mon>

CHANGES IN VERSION 0.99.3
-------------------------
 o Using Sweave rather than pgfSweave to build on lamb1. <2011-03-28 Mon>

CHANGES IN VERSION 0.99.2
-------------------------
 o updated references in package Rd <2011-03-24 Thu>
 o added readIspyData.Rd  <2011-03-24 Thu>
 o removed old readMzXMLData function <2011-03-24 Thu>
 o cleaning up code <2011-03-24 Thu>
 o fixed MSnSet initialize: setting experimentData as MIAPE <2011-03-25 Fri>
 o fixed MSnSet initialize: identical featureNames in assayData and 
   featureData for empty MSnExp istances <2011-03-25 Fri>
 o better test organisation and added object validity tests <2011-03-25 Fri>
 o updated readIspyData function <2011-03-25 Fri>

CHANGES IN VERSION 0.99.1
-------------------------
 o fake vignettes are copied back in inst/doc/. to 
   make sur tar tarball can be extracted and build 
   again <2011-03-24 Thu> 
 o Making clean after make all <2011-03-24 Thu> 

CHANGES IN VERSION 0.99.0
-------------------------
 o MSnProcess@process get's one line when subsetting and MSnExp object <2011-03-21 Mon>
 o Updated vignette Makefile <2011-03-22 Tue>
 o Added fake vignettes <2011-03-22 Tue>
 o Version set to 0.99.0 <2011-03-22 Tue>
 o Minor changes in quantify-method.Rd <2011-03-22 Tue>
 o added .Rbuildignore to ignore 'sweave-cache.*' <2011-03-22 Tue>
 o added R/zzz.R with start-up message <2011-03-23 Wed>
 o Added width generic <2011-03-23 Wed>
 o IRanges in now imported <2011-03-23 Wed>

CHANGES IN VERSION 0.2.0 <2011-03-17 Thu>
------------------------
 o MSnSet now extends eSet, reimplementing the ExpressionSet class
   with exception of the experimentData slot, that must now be a MIAPE
   instance.
 o updated MIAPE substantially and added accessor methods.
 o updated docs and vignettes to reflect above changes.

CHANGES IN VERSION 0.1.5
------------------------
 o added zoo to Suggest, as zoo::rollapply is used in vignette.
 o changes rollapply call to zoo:::rollapply.zoo, to make it 
   work with zoo_1.6-4, rather that depending on zoo_1.7-0, which 
   is not yet on CRAN (only r-forge).
 o added vns to Suggests, as it is used in the demo vignette.

CHANGES IN VERSION 0.1.4
------------------------
 o added pgfSweave to Suggests, as is called in vignette Makefile

CHANGES IN VERSION 0.1.3
------------------------
 o Updates to ReporterIons man page
 o Moved some Depends to Imports and updated NAMESPACE
 o corrected a IRanges:::sapply ot IRanges::sapply in utils.R
 o added inst/tests/test_MSnProcess.R

CHANGES IN VERSION 0.1.2
------------------------
 o MSnProcess@MSnbaseVersion is not set in the initialize method instead to the prototype
 o changed R CMD to $(R_HOME)/bin/R CMD in inst/doc/Makefile
 o removed first and last (was 5th) MS1 spectra and associated MS2 spectra 
   from dummy file to reduce size below 2MB.
 o Updated tests to reflect new dummy data set
 o Edition of dummy brakes readMzXMLData with msLevel=1 -- comment related tests
 o Updated MSnbase-demo vignette and man to use good spectra un plots (i.e "X43" instead of "X64")

CHANGES IN VERSION 0.1.1
------------------------
 o Added LazyLoad: yes in DESCRIPTION and modified docs accordingly
 o Added NEWS file

CHANGES IN VERSION 0.1.0
------------------------
 o Added MSnbase-demo vignette
 o Added MSnbase-development vignette
