Quantile smoothing and genomic visualization of array data


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Documentation for package ‘quantsmooth’ version 1.18.0

Help Pages

affy.cn Example data from several quantitative genomic methods
affy.pos Example data from several quantitative genomic methods
bac.cn Example data from several quantitative genomic methods
bac.pos Example data from several quantitative genomic methods
characterCHR Conversion of chromosome IDs between numeric and character
chr14 Example data from several quantitative genomic methods
drawSimpleChrom Draw chromosome-like icons
getChangedRegions getChangedRegions
getLambdaMin getLambdaMin
grid.chromosome Draw a chromosome using the grid package
ill.cn Example data from several quantitative genomic methods
ill.pos Example data from several quantitative genomic methods
lengthChromosome Retrieve chromosomal length
numericCHR Conversion of chromosome IDs between numeric and character
paintCytobands Paint a chromosomal idiogram
plotChromosome Wrapper for plotSmoothed
plotSmoothed plotSmoothed
position2Cytoband Determine cytoband position based on location of probe
prepareGenomePlot Set up a full genome plot
quantsmooth quantsmooth
quantsmooth.cv quantsmooth.cv
quantsmooth.seg quantsmooth.seg
scaleto Scales data within a range to a new range