Quick Read Quality Control


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Documentation for package ‘qrqc’ version 1.0.0

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FASTASummary-class 'FASTASummary' class representing the summaries of a FASTA file
FASTQSummary-class 'FASTQSummary' class representing the summaries of a FASTQ file
makeReport Make an HTML report from a FASTASummary of FASTQSummary object
makeReport-method 'FASTASummary' class representing the summaries of a FASTA file
makeReport-method 'FASTQSummary' class representing the summaries of a FASTQ file
makeReport-methods Make an HTML report from a FASTASummary of FASTQSummary object
plotBases Plot Bases by Position
plotBases-method 'SequenceSummary' class representing the summaries of a sequence file
plotBases-methods Plot Bases by Position
plotGC Plot per Base GC Content by Position
plotGC-method 'SequenceSummary' class representing the summaries of a sequence file
plotGC-methods Plot per Base GC Content by Position
plotQuals Plot a Base Quality Boxplot by Position
plotQuals-method 'FASTQSummary' class representing the summaries of a FASTQ file
plotQuals-methods Plot a Base Quality Boxplot by Position
plotSeqLengths Plot Histogram of Sequence Lengths
plotSeqLengths-method 'SequenceSummary' class representing the summaries of a sequence file
plotSeqLengths-methods Plot Histogram of Sequence Lengths
readSeqFile Read and Summarize a Sequence (FASTA or FASTQ) File
SequenceSummary-class 'SequenceSummary' class representing the summaries of a sequence file