# Quality control for flow cytometry

## Documentation for package ‘flowQ’ version 1.12.0

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.

## Help Pages

flowQ-package | Quality control for flow cytometry
aggregatorList | Class "aggregatorList"
aggregatorList-class | Class "aggregatorList"
binaryAggregator | Class "binaryAggregator"
binaryAggregator-class | Class "binaryAggregator"
discreteAggregator | Class "discreteAggregator"
discreteAggregator-class | Class "discreteAggregator"
evaluateProcess | Evaluate QA processes
factorAggregator | Class "factorAggregator"
factorAggregator-class | Class "factorAggregator"
flowQ | Quality control for flow cytometry
initialize-method | Class "aggregatorList"
initialize-method | Class "qaGraph"
initialize-method | Class "qaGraphList"
initialize-method | Abstraction of the results of a QA process
initialize-method | Class "qaProcessFrame"
locateDuplicatedParameters | Locate Duplicated Parameters
names-method | Class "qaGraph"
normalizeSets | Locate Duplicated Parameters
numericAggregator | Class "numericAggregator"
numericAggregator-class | Class "numericAggregator"
outlier-class | Virtual Class "outlier"
outlierResult-class | Class "outlierResult"
outliers | ~~ Methods for Function outliers in Package '.GlobalEnv' ~~
outliers-method | ~~ Methods for Function outliers in Package '.GlobalEnv' ~~
outliers-methods | ~~ Methods for Function outliers in Package '.GlobalEnv' ~~
preProcessFlowList | Preprocess a list of flowSets to add empty flowFrames for patients in which certain aliquots are missing
qaAggregator | Abstraction of the possible outcomes of a QA process
qaAggregator-class | Abstraction of the possible outcomes of a QA process
qaGraph | Class "qaGraph"
qaGraph-class | Class "qaGraph"
qaGraphList | Class "qaGraphList"
qaGraphList-class | Class "qaGraphList"
qaProcess | Abstraction of the results of a QA process
qaProcess-class | Abstraction of the results of a QA process
qaProcess.2DStatsPlot | Creates a QA process for 2D summary statistic comparisons across multiple samples
qaProcess.BoundaryPlot | Creates a QA process for comparison of the percentage of boundary events for the specified parameters across multiple samples
qaProcess.cellnumber | Create QA process of type 'cellnumber'
qaProcess.DensityPlot | Creates a QA process for comparisons of density plots across multiple samples
qaProcess.ECDFPlot | Creates a QA process for comparisons of ECDF's across multiple samples
qaProcess.KLDistPlot | Creates a QA process for comparisons of KL Distances across multiple samples
qaProcess.marginevents | Create QA process of type 'marginevents'
qaProcess.timeflow | Create QA process of type 'timeflow'
qaProcess.timeline | Create QA process of type 'timeline'
qaProcessFrame | Class "qaProcessFrame"
qaProcessFrame-class | Class "qaProcessFrame"
qaProcessSummary | Class "qaProcessSummary"
qaProcessSummary-class | Class "qaProcessSummary"
qaReport | Create HTML report using one or several QA process function(s)
qData | Data for demonstrating QA processes that compares dye parameters from each patient across multiple aliquots
rangeAggregator | Class "rangeAggregator"
rangeAggregator-class | Class "rangeAggregator"
show-method | Class "aggregatorList"
show-method | Class "binaryAggregator"
show-method | Class "discreteAggregator"
show-method | Class "factorAggregator"
show-method | Class "numericAggregator"
show-method | Class "qaGraph"
show-method | Class "qaGraphList"
show-method | Abstraction of the results of a QA process
show-method | Class "qaProcessFrame"
show-method | Class "qaProcessSummary"
show-method | Class "rangeAggregator"
show-method | Class "stringAggregator"
stringAggregator | Class "stringAggregator"
stringAggregator-class | Class "stringAggregator"
txtFormatQAObject | Formats results contained in QA process objects into a data frame with appropriate row and column names
validProcess | Validate a QAProcess object
writeLines-method | Class "binaryAggregator"
writeLines-method | Class "discreteAggregator"
writeLines-method | Class "factorAggregator"
writeLines-method | Class "numericAggregator"
writeLines-method | Class "qaProcessSummary"
writeLines-method | Class "rangeAggregator"
writeLines-method | Class "stringAggregator"
writeLines-method | Create HTML report for (lists of) qaProcess objects
writeQAReport | Create HTML report for (lists of) qaProcess objects
writeQATextReport | Create tab delimited text files for (lists of) qaProcess objects