Vignettes of package chopsticks
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Example of genome-wide association testing:
- Introduction to chopsticks for analysis of GWA studies
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Comparing clustering algorithms:
- Comparing clustering algorithms for Illumina platforms
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Imputed SNP analyses and meta-analysis with chopsticks:
- Imputation and meta-analysis with chopsticks
- PCA vignette:
- Principal components analysis with chopsticks
- TDT vignette:
- Use of chopsticks in family--based association studies
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An R package for analysis of whole-genome association studies:
- Initial paper in "Human Heredity" (now rather out of date, but it
describes the philosophy of the package)