Client-side SOAP access KEGG


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Documentation for package ‘KEGGSOAP’ version 1.26.1

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bconv Client-side interface to obtain the KEGG ids for external gene IDs
bget Client-side interface to obtain KEGG database entries by a list of entry identifiers
color.pathway.by.objects Client-side interface to obtain an url for a KEGG pathway diagram with a given set of genes marked
get.best.best.neighbors.by.gene Client-side interface to obtain the name of genes that are homologous to a given gene
get.best.neighbors.by.gene Client-side interface to obtain the name of genes that are homologous to a given gene
get.compounds.by.pathway Client-side interface to obtain the KEGG ids for genes/enzymes/compounds/reactions that are involved in the interactions in a given pathway
get.enzymes.by.pathway Client-side interface to obtain the KEGG ids for genes/enzymes/compounds/reactions that are involved in the interactions in a given pathway
get.genes.by.ko Client-side interfaces to obtain the KEGG ko ids for a pathway and vice versa
get.genes.by.ko.class Client-side interfaces to obtain the KEGG ko ids for a pathway and vice versa
get.genes.by.motifs Client-side interface to obtain the name of genes that contain the motifs represented by a set of motif ids
get.genes.by.organism Client-side interface to obtain the KEGG ids for all the genes of a given organism
get.genes.by.pathway Client-side interface to obtain the KEGG ids for genes/enzymes/compounds/reactions that are involved in the interactions in a given pathway
get.ko.by.gene Client-side interfaces to obtain the KEGG ko ids for a pathway and vice versa
get.ko.by.ko.class Client-side interfaces to obtain the KEGG ko ids for a pathway and vice versa
get.kos.by.pathway Client-side interfaces to obtain the KEGG ko ids for a pathway and vice versa
get.motifs.by.gene Client-side interface to obtain the name of genes that are homologous to a given gene
get.paralogs.by.gene Client-side interface to obtain data for paralogous genes
get.pathways.by.compounds Client-side interface to obtain the KEGG pathway ids
get.pathways.by.enzymes Client-side interface to obtain the KEGG pathway ids
get.pathways.by.genes Client-side interface to obtain the KEGG pathway ids
get.pathways.by.kos Client-side interfaces to obtain the KEGG ko ids for a pathway and vice versa
get.pathways.by.reactions Client-side interface to obtain the KEGG pathway ids
get.reactions.by.pathway Client-side interface to obtain the KEGG ids for genes/enzymes/compounds/reactions that are involved in the interactions in a given pathway
getBestNeighbors Client-side interface to obtain the name of genes that are homologous to a given gene
KEGGaction Definitions of objects used by other functions to access KEGG SOAP service
KEGGserver Definitions of objects used by other functions to access KEGG SOAP service
KEGGxmlns Definitions of objects used by other functions to access KEGG SOAP service
list.databases Client-side interface to obtain the names of organisms supported by KEGG databases
list.organisms Client-side interface to obtain the names of organisms supported by KEGG databases
list.pathways Client-side interface to obtain the names of organisms supported by KEGG databases
mark.pathway.by.objects Client-side interface to obtain an url for a KEGG pathway diagram with a given set of genes marked
search.compounds.by.composition Client-side interface to obtain a list of chemical compounds
search.compounds.by.mass Client-side interface to obtain a list of chemical compounds
search.compounds.by.name Client-side interface to obtain a list of chemical compounds
search.compounds.by.subcomp Client-side interface to obtain a list of chemical compounds
search.glycans.by.composition Client-side interface to obtain a list of chemical glycans
search.glycans.by.kcam Client-side interface to obtain a list of chemical glycans
search.glycans.by.mass Client-side interface to obtain a list of chemical glycans
search.glycans.by.name Client-side interface to obtain a list of chemical glycans