Package: BioNet
Type: Package
Title: Routines for the functional analysis of biological networks
Version: 1.8.0
Date: 2010-07-19
Author: Marcus Dittrich and Daniela Beisser
Maintainer: Marcus Dittrich
        <marcus.dittrich@biozentrum.uni-wuerzburg.de>
Description: This package provides functions for the integrated
        analysis of protein-protein interaction networks and the
        detection of functional modules. Different datasets can be
        integrated into the network by assigning p-values of
        statistical tests to the nodes of the network. E.g. p-values
        obtained from the differential expression of the genes from an
        Affymetrix array are assigned to the nodes of the network. By
        fitting a beta-uniform mixture model and calculating scores
        from the p-values, overall scores of network regions can be
        calculated and an integer linear programming algorithm
        identifies the maximum scoring subnetwork.
License: GPL (>= 2)
Depends: R (>= 2.11.0), Biobase, graph, RBGL
Suggests: rgl, impute, DLBCL, genefilter, xtable, ALL, limma,
        hgu95av2.db
Imports: igraph, XML, AnnotationDbi
LazyLoad: yes
URL: http://bionet.bioapps.biozentrum.uni-wuerzburg.de/
biocViews: Microarray, DataImport, GraphsAndNetworks, Visualization,
        Bioinformatics, GeneExpression, DifferentialExpression
Packaged: 2010-10-18 11:46:37 UTC; biocbuild2
Built: R 2.12.0; ; 2010-10-18 15:46:51 UTC; windows
