map2Systematic {ppiData} | R Documentation

## A function that maps the Intact ID's to Yeast Systematic Names if possible

### Description

This function takse the IntAct accension numbers and maps to the yeast common names via intact repository and uses the org.Sc.sgd package to map the common names to the org.Sc.sgd Systematic names.

### Usage

    map2Systematic(allProt, tableList, sWAC)

### Arguments

`allProt` | A character vector of proteins to be mapped
`tableList` | The tableList element of the output from collectIntactData
`sWAC` | A named character vector; the names are SwissProt Accesion Codes and the elemnets are the Yeast Systematic names

### Value

The return value is a mapping of each Intact ID to it's respecting systematic name.

### Author(s)

T Chiang

### Examples

    data(sWAC2Sys)
    dataL = collectIntactData("EBI-375746")
    sysN = map2Systematic(dataL$allBaits, dataL$tableList, sWAC2Sys)

[Package ppiData version 0.1.13 Index]