AffymetrixDataTestFiles-package {AffymetrixDataTestFiles} | R Documentation

## Package AffymetrixDataTestFiles

### Description

This package contains annotation data files and sample data files of Affymetrix file formats. The files originate from the Affymetrix' Fusion SDK distribution. This package contains only data files.

### Requirements

None.

### Installation

To install this package, see http://www.bioconductor.org/.

### Location of data files

Data files are located in two different directory tree depending if they are annotation data files or sample data files. The roots of these two directory structures are:

         system.file("annotationData", package="AffymetrixDataTestFiles")
         system.file("rawData", package="AffymetrixDataTestFiles")

Where applicable, ASCII, XDA, and Calvin files are separated in different subdirectories for easy access to either type.

Directory structure:

       annotationData/
        chipTypes/
          HG-Focus/
            +-HG-Focus.PSI
            3.ASCII/
              +-HG-Focus.CDF
          Mapping10K_Xba131/
            1.XDA/
              +-Mapping10K_Xba131.CDF
            3.ASCII/
              +-Mapping10K_Xba131.CDF
          Test3/
            +-Test3.PSI
            1.XDA/
              +-Test3.CDF
            3.ASCII/
              +-Test3.CDF
      rawData/
        FusionSDK_HG-Focus/
          HG-Focus/
            +-HG-Focus-1-121502.EXP
            +-HG-Focus-2-121502.EXP
            1.XDA/
              +-HG-Focus-1-121502.CHP
              +-HG-Focus-2-121502.CHP
            2.Calvin/
              +-HG-Focus-1-121502.CEL
              +-HG-Focus-1-121502.CHP
              +-HG-Focus-2-121502.CEL
              +-HG-Focus-2-121502.CHP
            3.ASCII/
              +-HG-Focus-1-121502.CEL
              +-HG-Focus-2-121502.CEL
        FusionSDK_HG-U133A/
          HG-U133A/
            2.Calvin/
              +-ethan1-1.CEL
        FusionSDK_Test3/
          Test3/
            +-Test3-1-121502.EXP
            +-Test3-2-121502.EXP
            1.XDA/
              +-Test3-1-121502.CHP
              +-Test3-2-121502.CHP
            2.Calvin/
              +-Test3-1-121502.CEL
              +-Test3-1-121502.CHP
              +-Test3-2-121502.CEL
              +-Test3-2-121502.CHP
            3.ASCII/
              +-Test3-1-121502.CEL
              +-Test3-2-121502.CEL

### License

LGPL version 2.1 according to [1].

### Author(s)

Adopted from [1] by Henrik Bengtsson, hb@stat.berkeley.edu, James Bullard, bullard@stat.berkeley.edu and Kasper Daniel Hansen, khansen@stat.berkeley.edu.

### References

[1] Affymetrix Inc, Fusion Software Developers Kit (SDK), 2007. http://www.affymetrix.com/support/developer/fusion/

[Package AffymetrixDataTestFiles version 0.1.1 Index]