# Affymetrix Human Genome Focus Array annotation data (chip hgfocus)

## Documentation for package ‘hgfocus.db’ version 2.2.11

## Help Pages

hgfocus | Bioconductor annotation data package
hgfocusACCNUM | Map Manufacturer identifiers to GenBank Accession Numbers
hgfocusALIAS2PROBE | Map between Common Gene Symbol Identifiers and Manufacturer Identifiers
hgfocusCHR | Map Manufacturer IDs to Chromosomes
hgfocusCHRLENGTHS | A named vector for the length of each of the chromosomes
hgfocusCHRLOC | Map Manufacturer IDs to Chromosomal Location
hgfocusCHRLOCEND | Map Manufacturer IDs to Chromosomal Location
hgfocusENSEMBL | Map Ensembl gene accession numbers with Entrez Gene identifiers
hgfocusENSEMBL2PROBE | Map Ensembl gene accession numbers with Entrez Gene identifiers
hgfocusENTREZID | Map between Manufacturer Identifiers and Entrez Gene
hgfocusENZYME | Map between Manufacturer IDs and Enzyme Commission (EC) Numbers
hgfocusENZYME2PROBE | Map between Enzyme Commission Numbers and Manufacturer Identifiers
hgfocusGENENAME | Map between Manufacturer IDs and Genes
hgfocusGO | Map between Manufacturer IDs and Gene Ontology (GO)
hgfocusGO2ALLPROBES | Map between Gene Ontology (GO) Identifiers and all Manufacturer Identifiers in the subtree
hgfocusGO2PROBE | Map between Gene Ontology (GO) and Manufacturer Identifiers
hgfocusLOCUSID | Map between Manufacturer Identifiers and Entrez Gene
hgfocusMAP | Map between Manufacturer Identifiers and cytogenetic maps/bands
hgfocusMAPCOUNTS | Number of mapped keys for the maps in package hgfocus.db
hgfocusOMIM | Map between Manufacturer Identifiers and Mendelian Inheritance in Man (MIM) identifiers
hgfocusORGANISM | The Organism for hgfocus
hgfocusPATH | Mappings between probe identifiers and KEGG pathway identifiers
hgfocusPATH2PROBE | Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers
hgfocusPFAM | Map Manufacturer IDs to Pfam IDs
hgfocusPMID | Map between Manufacturer Identifiers and PubMed Identifiers
hgfocusPMID2PROBE | Map between PubMed Identifiers and Manufacturer Identifiers
hgfocusPROSITE | Map Manufacturer IDs to PROSITE ID
hgfocusREFSEQ | Map between Manufacturer Identifiers and RefSeq Identifiers
hgfocusSYMBOL | Map between Manufacturer Identifiers and Gene Symbols
hgfocusUNIGENE | Map between Manufacturer Identifiers and UniGene cluster identifiers
hgfocusUNIPROT | Map Uniprot accession numbers with Entrez Gene identifiers
hgfocusUNIPROT2PROBE | Map Uniprot accession numbers with Entrez Gene identifiers
hgfocus_dbconn | Collect information about the package annotation DB
hgfocus_dbfile | Collect information about the package annotation DB
hgfocus_dbInfo | Collect information about the package annotation DB
hgfocus_dbschema | Collect information about the package annotation DB