PFAMSCOP2AC {PFAM.db} | R Documentation

## Mappings from a SCOP ID to a PFAM Accession number

### Description

This is an R object that always contains mappings from a SCOP ID to a PFAM accession (AC)

### Details

The PFAM accession number has been attached to the SCOP IDs in this object.

More Details: Structural Classification of Proteins (http://scop.mrc-lmb.cam.ac.uk/scop/index.html). Reference: Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247, 536-540

### References

http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt

### Examples

            #To map from SCOP to PFAM IDs:
            x <- PFAMSCOP2AC
            # Get the SCOP identifiers that are mapped to a PFAM ID
            mapped_keys <- mappedkeys(x)
            # Convert to a list
            xx <- as.list(x[mapped_keys])
            if(length(xx) > 0) {
              # Get the SCOP ID for the first five CAZYs
              xx[1:5]
              # Get the first one
              xx[[1]]
            }

[Package PFAM.db version 2.2.11 Index]