normQpcrHouseKeepingGenes      package:qpcrNorm      R Documentation

_F_u_n_c_t_i_o_n _f_o_r _H_o_u_s_e_k_e_e_p_i_n_g _G_e_n_e _N_o_r_m_a_l_i_z_a_t_i_o_n _o_f _q_P_C_R _D_a_t_a.

_D_e_s_c_r_i_p_t_i_o_n:

     Implements housekeeping gene normalization for a 'qpcrBatch'
     object.

_U_s_a_g_e:

     normQpcrHouseKeepingGenes(qBatch, hkeep.genes)

_A_r_g_u_m_e_n_t_s:

  qBatch: A 'qpcrBatch' object to be normalized. 

hkeep.genes: Character vector, specifying which housekeeping genes to
          be used for normalization. 

_D_e_t_a_i_l_s:

     The names in 'hkeep.genes' must be a subset of the gene or primer
     pair names slot in the 'qpcrBatch' object.

_V_a_l_u_e:

     A 'qpcrBatch' object, the 'normalized' slot is now set at TRUE.

_A_u_t_h_o_r(_s):

     Jess Mar jess@jimmy.harvard.edu

_S_e_e _A_l_s_o:

     'normQpcrQuantile', 'normQpcrRankInvariant'

_E_x_a_m_p_l_e_s:

             data(qpcrBatch.object)
             mynormHK.data <- normQpcrHouseKeepingGenes(qpcrBatch.object, c("Gpx4"))

