justSNPRMA {oligo} | R Documentation

## Summarization of SNP data

### Description

This function implements the SNPRMA method for summarization of SNP data. It works directly with the CEL files, saving memory.

### Usage

    justSNPRMA(filenames, verbose = TRUE, phenoData = NULL, normalizeToHapmap = TRUE)

### Arguments

`filenames` | character vector with the filenames.
`verbose` | logical flag for verbosity.
`phenoData` | a `phenoData` object or `NULL`
`normalizeToHapmap` | Normalize to Hapmap? Should always be TRUE, but it's kept here for future use.

### Value

`SnpQSet` or a `SnpCnvQSet`, depending on the array type.

### Examples

    ## snprmaResults <- justSNPRMA(list.celfiles())

[Package oligo version 1.8.3 Index]