basicRMA {oligo} | R Documentation

## Simplified Interface to RMA

### Description

Simple interface to RMA.

### Usage

    basicRMA(pmMat, pnVec, normalize = TRUE, background = TRUE, bgversion = 2, destructive = FALSE, verbose = TRUE, ...)

### Arguments

`pmMat` | Matrix of intensities to be processed.
`pnVec` | Probeset names.
`normalize` | Logical flag: normalize?
`background` | Logical flag: background adjustment?
`bgversion` | Version of background correction.
`destructive` | Logical flag: use destructive methods?
`verbose` | Logical flag: verbose.
`...` | Not currently used.

### Value

Matrix.

### Examples

    set.seed(1)
    pms <- matrix(rnorm(1000), nc=20)
    colnames(pms) <- paste("sample", 1:20, sep="")
    pns <- rep(letters[1:10], each=5)
    res <- basicRMA(pms, pns, length(unique(pns)), TRUE, TRUE)
    res[, 1:3]

[Package oligo version 1.8.3 Index]