# GUI for exploratory data analysis of systems biology data

## Documentation for package ‘explorase’ version 1.8.1

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

explorase | Start exploRase
exp_addEntityType | Add an entity type
exp_addFilterRule | Add a filter rule
exp_calcAngleDist | Caclulate angle distance
exp_calcCanberraDist | Calculate Canberra distance
exp_calcCorrelationDist | Calculate correlation distance
exp_calcDiff | Calculate difference
exp_calcEuclideanDist | Calculate Euclidean distance
exp_calcMahalanobisDist | Calculate Mahalanobis distance
exp_calcResiduals | Calculate residuals
exp_calcZeroCorDist | Calculate zero-correlation distance
exp_close | Close exploRase
exp_colorEntities | Coloring entities
exp_dataFrame | Get experimental data
exp_dataset | Get experimental data
exp_designFactors | Get the exp. design factors
exp_designFrame | Get the exp. design
exp_designSelection | Get selected conditions
exp_entitiesInList | Get the entities in a list
exp_entityFrame | Get entity metadata
exp_entitySelection | Get selected entities
exp_entityType | Get the current entity type
exp_entityTypes | Get all entity types
exp_expressionSet | ExpressionSet Integration
exp_featureData | ExpressionSet Integration
exp_filterRules | Get filter rules
exp_findPatterns | Find Patterns
exp_ggobi | Get the GGobi session
exp_isRunning | Check whether exploRase is running
exp_listFrame | Get entity lists
exp_listSelection | Get selected lists
exp_loadData | Load experimental data
exp_loadDesign | Load experimental design
exp_loadExpressionSet | ExpressionSet Integration
exp_loadFiles | Load files
exp_loadInfo | Load entity metadata
exp_loadLists | Load entity lists
exp_loadProject | Load a project
exp_newList | Create an entity list
exp_phenoData | ExpressionSet Integration
exp_removeFilterRules | Remove filter rules
exp_showClustering | Show a hierarchical clustering
exp_showPatterns | Show patterns
exp_showResults | Show analysis results
exp_toggleFilterRules | Toggle filter rules