spmCollection-class         package:KCsmart         R Documentation

_S_a_m_p_l_e _p_o_i_n_t _m_a_t_r_i_x _c_o_l_l_e_c_t_i_o_n

_D_e_s_c_r_i_p_t_i_o_n:

     A sample point matrix collection resulting from a call to
     calcSpmCollection

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can not be created by the user directly but rather through
     calcSpmCollection.

_S_l_o_t_s:


     '_a_n_n_o_t_a_t_i_o_n': The annotation (containing the chromosome and
          position on the chromosome) for the sample points in the
          'data' slot

     '_d_a_t_a': A matrix with the kernel smoothed estimates of all samples

     '_c_l': A class vector indicating which samples belong to which
          class

     '_s_a_m_p_l_e_D_e_n_s_i_t_y': The sample density used to calculate the sample
          point matrix. ie the distance between two points in the
          sample point matrix, measured in base pairs. 

     '_s_i_g_m_a': The sigma used for the kernel to calculate the sample
          point matrix.

     '_m_i_r_r_o_r_L_o_c_s': The mirror locations list used to calculate the
          sample point matrix


_M_e_t_h_o_d_s:


     _s_h_o_w 'signature(object = "spmCollection")': ... 

_E_x_a_m_p_l_e_s:

     showClass("spmCollection")

