GeneSelector-package	GeneSelector-package
AdjustPvalues	AdjustPvalues
AggregateBayes	AggregateBayes
AggregateBayes,RepeatRanking,StabilityLm-method	AggregateBayes-methods
AggregateBayes,RepeatRanking,StabilityOverlap-method	AggregateBayes-methods
AggregateBayes-methods	AggregateBayes-methods
AggregatedRanking	AggregatedRanking-class
AggregatedRanking-class	AggregatedRanking-class
AggregatePCA	AggregatePCA
AggregatePCA,RepeatRanking-method	AggregatePCA-methods
AggregatePCA-methods	AggregatePCA-methods
AggregatePenalty	AggregatePenalty
AggregatePenalty,RepeatRanking-method	AggregatePenalty-methods
AggregatePenalty-methods	AggregatePenalty-methods
AggregateSimple	AggregateSimple
AggregateSimple,RepeatRanking,StabilityLm-method	AggregateSimple-methods
AggregateSimple,RepeatRanking,StabilityOverlap-method	AggregateSimple-methods
AggregateSimple-methods	AggregateSimple-methods
BootMatrix	BootMatrix-class
BootMatrix-class	BootMatrix-class
characterplot	internals
CombinedRanking	CombinedRanking-class
CombinedRanking-class	CombinedRanking-class
combn	internals
FoldMatrix	FoldMatrix-class
FoldMatrix-class	FoldMatrix-class
FoldMatrix-method	FoldMatrix-class
GeneInfoScreen	CombinedRanking-class
GeneInfoScreen,CombinedRanking-method	CombinedRanking-class
GeneInfoScreen-methods	CombinedRanking-class
GeneRanking	GeneRanking-class
GeneRanking-class	GeneRanking-class
GenerateBootMatrix	GenerateBootMatrix
GenerateBootMatrix,ExpressionSet,character-method	GenerateBootMatrix-methods
GenerateBootMatrix,matrix,factor-method	GenerateBootMatrix-methods
GenerateBootMatrix,matrix,numeric-method	GenerateBootMatrix-methods
GenerateBootMatrix-methods	GenerateBootMatrix-methods
GenerateFoldMatrix	GenerateFoldMatrix
GenerateFoldMatrix,ExpressionSet,character-method	GenerateFoldMatrix-methods
GenerateFoldMatrix,matrix,factor-method	GenerateFoldMatrix-methods
GenerateFoldMatrix,matrix,numeric-method	GenerateFoldMatrix-methods
GenerateFoldMatrix-methods	GenerateFoldMatrix-methods
GeneSelector	GeneSelector
GeneSelector,list-method	GeneSelector-methods
GeneSelector-methods	GeneSelector-methods
GetAlpha	GetAlpha
getLambda	internals
GetRepeatRanking	GetRepeatRanking
GetRepeatRanking,GeneRanking,BootMatrix,missing,missing,missing-method	GetRepeatRanking-methods
GetRepeatRanking,GeneRanking,FoldMatrix,ANY,missing,missing-method	GetRepeatRanking-methods
GetRepeatRanking,GeneRanking,missing,missing,ANY,ANY-method	GetRepeatRanking-methods
GetRepeatRanking-methods	GetRepeatRanking-methods
GetStabilityGLM	GetStabilityGLM
GetStabilityGLM,RepeatRanking-method	GetStabilityGLM-methods
GetStabilityGLM-methods	GetStabilityGLM-methods
GetStabilityLm	GetStabilityLm
GetStabilityLm,RepeatRanking-method	GetStabilityLm-methods
GetStabilityLm-methods	GetStabilityLm-methods
GetStabilityOverlap	GetStabilityOverlap
GetStabilityOverlap,RepeatRanking-method	GetStabilityOverlap-methods
GetStabilityOverlap-methods	GetStabilityOverlap-methods
GetStabilityPCA	GetStabilityPCA
GetStabilityPCA,RepeatRanking-method	GetStabilityPCA-methods
GetStabilityPCA-methods	GetStabilityPCA-methods
HeatmapMethods	HeatmapMethods
HeatmapMethods,list-method	HeatmapMethods-methods
HeatmapMethods-methods	HeatmapMethods-methods
join	join
join,RepeatRanking,RepeatRanking-method	join-methods
join-methods	join-methods
overlap	internals
PCAMethods	PCAMethods
PCAMethods,list-method	PCAMethods-methods
PCAMethods-methods	PCAMethods-methods
PCAMethodsResult	PCAMethodsResult-class
PCAMethodsResult-class	PCAMethodsResult-class
plot,AggregatedRanking	plot,AggregatedRanking
plot,AggregatedRanking,missing-method	plot,AggregatedRanking
plot,CombinedRanking	plot,CombinedRanking
plot,CombinedRanking,missing-method	plot,CombinedRanking
plot,RepeatRanking	plot,RepeatRanking
plot,RepeatRanking,missing-method	plot,RepeatRanking
plot,StabilityLm	plot,StabilityLm
plot,StabilityLm,missing-method	plot,StabilityLm
plot,StabilityOverlap	plot,StabilityOverlap
plot,StabilityOverlap,missing-method	plot,StabilityOverlap
posterior1	internals
posterior2	internals
posterior3	internals
posterior4	internals
RankingBaldiLong	RankingBaldiLong
RankingBaldiLong,ExpressionSet,character-method	RankingBaldiLong-methods
RankingBaldiLong,matrix,factor-method	RankingBaldiLong-methods
RankingBaldiLong,matrix,numeric-method	RankingBaldiLong-methods
RankingBaldiLong-methods	RankingBaldiLong-methods
RankingBstat	RankingBstat
RankingBstat,ExpressionSet,character-method	RankingBstat-methods
RankingBstat,matrix,factor-method	RankingBstat-methods
RankingBstat,matrix,numeric-method	RankingBstat-methods
RankingBstat-methods	RankingBstat-methods
RankingEbam	RankingEbam
RankingEbam,ExpressionSet,character-method	RankingEbam-methods
RankingEbam,matrix,factor-method	RankingEbam-methods
RankingEbam,matrix,numeric-method	RankingEbam-methods
RankingEbam-methods	RankingEbam-methods
RankingFC	RankingFC
RankingFC,ExpressionSet,character-method	RankingFC-methods
RankingFC,matrix,factor-method	RankingFC-methods
RankingFC,matrix,numeric-method	RankingFC-methods
RankingFC-methods	RankingFC-methods
RankingFoxDimmic	RankingFoxDimmic
RankingFoxDimmic,ExpressionSet,character-method	RankingFoxDimmic-methods
RankingFoxDimmic,matrix,factor-method	RankingFoxDimmic-methods
RankingFoxDimmic,matrix,numeric-method	RankingFoxDimmic-methods
RankingFoxDimmic-methods	RankingFoxDimmic-methods
RankingGap	RankingGap
RankingGap,ExpressionSet,character-method	RankingGap-methods
RankingGap,matrix,factor-method	RankingGap-methods
RankingGap,matrix,numeric-method	RankingGap-methods
RankingGap-methods	RankingGap-methods
RankingLimma	RankingLimma
RankingLimma,ExpressionSet,character-method	RankingLimma-methods
RankingLimma,matrix,factor-method	RankingLimma-methods
RankingLimma,matrix,numeric-method	RankingLimma-methods
RankingLimma-methods	RankingLimma-methods
RankingPermutation	RankingPermutation
RankingPermutation,ExpressionSet,character-method	RankingPermutation-methods
RankingPermutation,matrix,factor-method	RankingPermutation-methods
RankingPermutation,matrix,numeric-method	RankingPermutation-methods
RankingPermutation-methods	RankingPermutation-methods
RankingSam	RankingSam
RankingSam,ExpressionSet,character-method	RankingSam-methods
RankingSam,matrix,factor-method	RankingSam-methods
RankingSam,matrix,numeric-method	RankingSam-methods
RankingSam-methods	RankingSam-methods
RankingShrinkageT	RankingShrinkageT
RankingShrinkageT,ExpressionSet,character-method	RankingShrinkageT-methods
RankingShrinkageT,matrix,factor-method	RankingShrinkageT-methods
RankingShrinkageT,matrix,numeric-method	RankingShrinkageT-methods
RankingShrinkageT-methods	RankingShrinkageT-methods
RankingSoftthresholdT	RankingSoftthresholdT
RankingSoftthresholdT,ExpressionSet,character-method	RankingSoftthresholdT-methods
RankingSoftthresholdT,matrix,factor-method	RankingSoftthresholdT-methods
RankingSoftthresholdT,matrix,numeric-method	RankingSoftthresholdT-methods
RankingSoftthresholdT-methods	RankingSoftthresholdT-methods
RankingTstat	RankingTstat
RankingTstat,ExpressionSet,character-method	RankingTstat-methods
RankingTstat,matrix,factor-method	RankingTstat-methods
RankingTstat,matrix,numeric-method	RankingTstat-methods
RankingTstat-methods	RankingTstat-methods
RankingWelchT	RankingWelchT
RankingWelchT,ExpressionSet,character-method	RankingWelchT-methods
RankingWelchT,matrix,factor-method	RankingWelchT-methods
RankingWelchT,matrix,numeric-method	RankingWelchT-methods
RankingWelchT-methods	RankingWelchT-methods
RankingWilcEbam	RankingWilcEbam
RankingWilcEbam,ExpressionSet,character-method	RankingWilcEbam-methods
RankingWilcEbam,matrix,factor-method	RankingWilcEbam-methods
RankingWilcEbam,matrix,numeric-method	RankingWilcEbam-methods
RankingWilcEbam-methods	RankingWilcEbam-methods
RankingWilcoxon	RankingWilcoxon
RankingWilcoxon,ExpressionSet,character-method	RankingWilcoxon-methods
RankingWilcoxon,matrix,factor-method	RankingWilcoxon-methods
RankingWilcoxon,matrix,numeric-method	RankingWilcoxon-methods
RankingWilcoxon-methods	RankingWilcoxon-methods
RecoveryScore	RecoveryScore
RepeatRanking	RepeatRanking-class
RepeatRanking-class	RepeatRanking-class
samplingcontrol	samplingcontrol
SelectedGenes	CombinedRanking-class
SelectedGenes,CombinedRanking-method	CombinedRanking-class
SelectedGenes-methods	CombinedRanking-class
show,AggregatedRanking-method	AggregatedRanking-class
show,BootMatrix-method	BootMatrix-class
show,CombinedRanking-method	CombinedRanking-class
show,FoldMatrix-method	FoldMatrix-class
show,GeneRanking-method	GeneRanking-class
show,PCAMethodsResult-method	PCAMethodsResult-class
show,RepeatRanking-method	RepeatRanking-class
show,StabilityGLM-method	StabilityGLM-class
show,StabilityLm-method	StabilityLm-class
show,StabilityOverlap-method	StabilityOverlap-class
show,StabilityPCA-method	StabilityPCA-class
StabilityGLM	StabilityGLM-class
StabilityGLM-class	StabilityGLM-class
StabilityLm	StabilityLm-class
StabilityLm-class	StabilityLm-class
StabilityOverlap	StabilityOverlap-class
StabilityOverlap-class	StabilityOverlap-class
StabilityPCA	StabilityPCA-class
StabilityPCA-class	StabilityPCA-class
summary,BootMatrix-method	BootMatrix-class
summary,FoldMatrix-method	FoldMatrix-class
summary,GeneRanking	summary,GeneRanking
summary,GeneRanking-method	GeneRanking-class
summary,StabilityOverlap	summary,StabilityOverlap
summary,StabilityOverlap-method	StabilityOverlap-class
toplist	toplist-methods
toplist,CombinedRanking-method	CombinedRanking-class
toplist,GeneRanking-method	GeneRanking-class
toplist,RepeatRanking-method	RepeatRanking-class
toplist-methods	toplist-methods
toydata	toydata
variance	variance,RepeatRanking
variance,RepeatRanking-method	variance,RepeatRanking
