smlSummary {GGBase} | R Documentation

## class and function to summarize frequency information on genotypes in an smlSet

### Description

generates information on sample size, minor allele frequency, specific call frequencies, and HWE test results on all SNP in an smlSet

### Usage

    smlSummary(x)

### Arguments

`x` | instance of `smlSet-class`

### Details

to control volume of printout a simple list extending class is defined for show method

### Value

Instance of smlSummary class, which simply extends list. Each list element is a matrix of results provided by `summary,snp.matrix-method`.

### Author(s)

VJCarey <stvjc@channing.harvard.edu>

### Examples

    library(GGtools)
    if (!exists("hmceuB36.2021")) data(hmceuB36.2021)
    smlSummary(hmceuB36.2021)

[Package GGBase version 3.4.0 Index]