\HeaderA{smlSummary}{class and function to summarize frequency information
on genotypes in an smlSet}{smlSummary}
\aliasA{show,smlSummary-method}{smlSummary}{show,smlSummary.Rdash.method}
\aliasA{smlSummary-class}{smlSummary}{smlSummary.Rdash.class}
\keyword{models}{smlSummary}
\begin{Description}\relax
generates information on sample size, minor allele frequency, specific
call frequencies, and HWE test results on all SNP in an smlSet
\end{Description}
\begin{Usage}
\begin{verbatim}
smlSummary(x)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{x}] instance of \code{\LinkA{smlSet-class}{smlSet.Rdash.class}}

\end{ldescription}
\end{Arguments}
\begin{Details}\relax
to control volume of printout a simple list extending class
is defined for show method
\end{Details}
\begin{Value}
Instance of smlSummary class, which simply extends list.
Each list element is a matrix of results provided by
\code{\LinkA{summary,snp.matrix-method}{summary,snp.matrix.Rdash.method}}.
\end{Value}
\begin{Author}\relax
VJCarey \textless{}stvjc@channing.harvard.edu\textgreater{}
\end{Author}
\begin{Examples}
\begin{ExampleCode}
library(GGtools)
if (!exists("hmceuB36.2021")) data(hmceuB36.2021)
smlSummary(hmceuB36.2021)
\end{ExampleCode}
\end{Examples}

