smlSummary              package:GGBase              R Documentation

_c_l_a_s_s _a_n_d _f_u_n_c_t_i_o_n _t_o _s_u_m_m_a_r_i_z_e _f_r_e_q_u_e_n_c_y _i_n_f_o_r_m_a_t_i_o_n
_o_n _g_e_n_o_t_y_p_e_s _i_n _a_n _s_m_l_S_e_t

_D_e_s_c_r_i_p_t_i_o_n:

     generates information on sample size, minor allele frequency,
     specific call frequencies, and HWE test results on all SNP in an
     smlSet

_U_s_a_g_e:

     smlSummary(x)

_A_r_g_u_m_e_n_t_s:

       x: instance of 'smlSet-class' 

_D_e_t_a_i_l_s:

     to control volume of printout a simple list extending class is
     defined for show method

_V_a_l_u_e:

     Instance of smlSummary class, which simply extends list. Each list
     element is a matrix of results provided by
     'summary,snp.matrix-method'.

_A_u_t_h_o_r(_s):

     VJCarey <stvjc@channing.harvard.edu>

_E_x_a_m_p_l_e_s:

     library(GGtools)
     if (!exists("hmceuB36.2021")) data(hmceuB36.2021)
     smlSummary(hmceuB36.2021)

