# Resampling-based multiple hypothesis testing

## Documentation for package ‘multtest’ version 2.0.0

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

ABH.h0 | Functions for generating guessed sets of true null hypotheses in empirical Bayes resampling-based multiple hypothesis testing
as.list | Methods for MTP and EBMTP objects in Package 'multtest'
as.list,EBMTP-method | Methods for MTP and EBMTP objects in Package 'multtest'
as.list,MTP-method | Methods for MTP and EBMTP objects in Package 'multtest'
as.list-methods | Methods for MTP and EBMTP objects in Package 'multtest'
dens.est | Functions for generating guessed sets of true null hypotheses in empirical Bayes resampling-based multiple hypothesis testing
EBMTP | A function to perform empirical Bayes resampling-based multiple hypothesis testing
EBMTP-class | Class "EBMTP", classes and methods for empirical Bayes multiple testing procedure output
EBMTP-method | Class "EBMTP", classes and methods for empirical Bayes multiple testing procedure output
EBMTP-methods | Methods for MTP and EBMTP objects in Package 'multtest'
ebmtp2mtp | Methods for MTP and EBMTP objects in Package 'multtest'
ebmtp2mtp,EBMTP-method | Methods for MTP and EBMTP objects in Package 'multtest'
ebmtp2mtp-methods | Methods for MTP and EBMTP objects in Package 'multtest'
EBupdate | Methods for MTP and EBMTP objects in Package 'multtest'
EBupdate,EBMTP-method | Methods for MTP and EBMTP objects in Package 'multtest'
EBupdate-methods | Methods for MTP and EBMTP objects in Package 'multtest'
G.VS | Functions for generating guessed sets of true null hypotheses in empirical Bayes resampling-based multiple hypothesis testing
golub | Gene expression dataset from Golub et al. (1999)
golub.cl | Gene expression dataset from Golub et al. (1999)
golub.gnames | Gene expression dataset from Golub et al. (1999)
Hsets | Functions for generating guessed sets of true null hypotheses in empirical Bayes resampling-based multiple hypothesis testing
mt.maxT | Step-down maxT and minP multiple testing procedures
mt.minP | Step-down maxT and minP multiple testing procedures
mt.plot | Plotting results from multiple testing procedures
mt.rawp2adjp | Adjusted p-values for simple multiple testing procedures
mt.reject | Identity and number of rejected hypotheses
mt.sample.label | Permutation distribution of test statistics and raw (unadjusted) p-values
mt.sample.rawp | Permutation distribution of test statistics and raw (unadjusted) p-values
mt.sample.teststat | Permutation distribution of test statistics and raw (unadjusted) p-values
mt.teststat | Computing test statistics for each row of a data frame
mt.teststat.num.denum | Computing test statistics for each row of a data frame
MTP | A function to perform resampling-based multiple hypothesis testing
MTP-class | Class "MTP", classes and methods for multiple testing procedure output
MTP-methods | Methods for MTP and EBMTP objects in Package 'multtest'
mtp2ebmtp | Methods for MTP and EBMTP objects in Package 'multtest'
mtp2ebmtp,MTP-method | Methods for MTP and EBMTP objects in Package 'multtest'
mtp2ebmtp-methods | Methods for MTP and EBMTP objects in Package 'multtest'
plot | Methods for MTP and EBMTP objects in Package 'multtest'
plot,EBMTP-method | Methods for MTP and EBMTP objects in Package 'multtest'
plot,MTP-method | Methods for MTP and EBMTP objects in Package 'multtest'
plot-methods | Methods for MTP and EBMTP objects in Package 'multtest'
print,EBMTP-method | Methods for MTP and EBMTP objects in Package 'multtest'
print,MTP-method | Methods for MTP and EBMTP objects in Package 'multtest'
print-methods | Methods for MTP and EBMTP objects in Package 'multtest'
print.MTP | Methods for MTP and EBMTP objects in Package 'multtest'
summary | Methods for MTP and EBMTP objects in Package 'multtest'
summary,EBMTP-method | Methods for MTP and EBMTP objects in Package 'multtest'
summary,MTP-method | Methods for MTP and EBMTP objects in Package 'multtest'
summary-methods | Methods for MTP and EBMTP objects in Package 'multtest'
update | Methods for MTP and EBMTP objects in Package 'multtest'
update,MTP-method | Methods for MTP and EBMTP objects in Package 'multtest'
update-methods | Methods for MTP and EBMTP objects in Package 'multtest'
VScount | Functions for generating guessed sets of true null hypotheses in empirical Bayes resampling-based multiple hypothesis testing
[,EBMTP-method | Methods for MTP and EBMTP objects in Package 'multtest'
[,MTP-method | Methods for MTP and EBMTP objects in Package 'multtest'
[-methods | Methods for MTP and EBMTP objects in Package 'multtest'