createMipsMatrix            package:ScISI            R Documentation

_A _f_u_n_c_t_i_o_n _t_o _c_r_e_a_t_e _t_h_e _b_i_p_a_r_t_i_t_e _g_r_a_p_h _i_n_c_i_d_e_n_c_e _m_a_t_r_i_x _f_r_o_m
_M_I_P_S _p_r_o_t_e_i_n _c_o_m_p_l_e_x_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     This function takes the output from the 'getMipsInfo' function and
     creates the bipartite graph incidence matrix where the rows are
     indexed by proteins and colunms by protein complexes (given by the
     MIPS ID's).

_U_s_a_g_e:

     createMipsMatrix(mipsL)

_A_r_g_u_m_e_n_t_s:

   mipsL: A list consisting of the two items: mipsL$Mips is a named
          list of character vectors. The names correspond to MIPS
          protein complexes and the character vector correspond to the
          proteins within that complex; and mipsL$DESC is a named
          character vector where the names are the protein complex MIPS
          ID and the values is the description of the complex.

_V_a_l_u_e:

     A bipartite graph incidence matrix of the MIPS protein complexes
     where rows are indexed by proteins names  and colunms by the MIPS
     ID's pre-fixed with "MIPS-".

_A_u_t_h_o_r(_s):

     Tony Chiang

_R_e_f_e_r_e_n_c_e_s:

     mips.gfs.de

_E_x_a_m_p_l_e_s:

     #mips= getMipsInfo(wantSubComplexes = FALSE)
     #mipsM = createMipsMatrix(mips)

