locScISI                package:ScISI                R Documentation

_A _d_a_t_a _f_i_l_e _u_s_e_d _t_o _e_s_t_i_m_a_t_e _t_h_e _l_o_c_a_t_i_o_n _o_f _t_h_e _c_o_m_p_l_e_x_e_s _o_f _t_h_e
_S_c_I_S_I

_D_e_s_c_r_i_p_t_i_o_n:

     This is a three tier-ed list. The top list contains two sub-lists
     which have either the nucleus GO term or the cytoplasm GO terms as
     reference. For each sub-list, we have three entries: 1. A matrix
     indexed by only nuclear proteins in the rows and only non-trivial
     complexes with respect to the row indices; 2. A matrix with all
     proteins of the original ScISI indexing the rows, but the same
     complexes of (1) indexing the columns; 3. a numeric vector with
     the ratio of the column sums of (1) by the column sums of (2).
     This is used to derive nuclear protein complexes - those complexes
     with 75 percent or more of its constituent members belonging to
     the nucleus.

_U_s_a_g_e:

     data(locScISI)

_F_o_r_m_a_t:

     The format is: chr "locScISI"

_E_x_a_m_p_l_e_s:

     data(locScISI)

