graphSumStats             package:ScISI             R Documentation

_A_n _i_n_i_t_i_a_t_i_o_n _f_u_n_c_t_i_o_n _t_o _g_e_n_e_r_a_t_e _g_r_a_p_h _s_t_a_t_i_s_t_i_c_s

_D_e_s_c_r_i_p_t_i_o_n:

     This function takes an in silico interactome and a list of Y2H
     experimental data (see details) and generates various graph
     summary statistics.

_U_s_a_g_e:

     graphSumStats(ISI, bait2PreyL)

_A_r_g_u_m_e_n_t_s:

     ISI: An incidence matrix representation of a bi-partite graph of
          an in silico interactome

bait2PreyL: A list of y2h information. The data structure is that of
          intactInfo.rda of the y2hStat package

_V_a_l_u_e:

 complex: A character vector of the constituent members of the proteinn
          complex of interest

complexBait: A character vector of those protein members which were
          also tested as baits in the y2h experiment

 notBait: A character vector of those protein members which were not
          tested as baits

avgDegOut: The average out-degree of the bait proteins of the complex
          of interest

notIsolated: A character vector of proteins that showed experimental
          binary affiliation for some other complex member

y2hGraph: An instance of the class graph; a graphNEL induceds Y2H graph
          on the protein complex

popMeanDegree: The population mean degree derived from the bait
          proteins

edgeProp: The estimated edge proportions derived between undirected Y2H
          edges

 degBait: A named list; each name corresponds to each member of the
          protein complex with the entry the number of proteins to
          which it is adjacent

_A_u_t_h_o_r(_s):

     T Chiang

