getAPMSData              package:ScISI              R Documentation

_A _f_u_n_c_t_i_o_n _t_o _g_e_t _t_h_e _e_s_t_i_m_a_t_e_d _c_o_m_p_l_e_x_e_s _f_r_o_m _h_i_g_h
_t_h_r_o_u_g_h_p_u_t _d_a_t_a _d_e_t_e_r_m_i_n_e_d _b_y _t_h_e _p_a_c_k_a_g_e _a_p_C_o_m_p_l_e_x.

_D_e_s_c_r_i_p_t_i_o_n:

     This function will generate the bipartite graph (BG) incidence
     matrix from either the experiments of Gavin, Ho, or Krogan.

_U_s_a_g_e:

     getAPMSData(author = NULL)

_A_r_g_u_m_e_n_t_s:

  author: A character - name of the lead experimentor. It can be either
          "Gavin", "Ho", or "Krogan"

_D_e_t_a_i_l_s:

     This function is called to gain access to the protein complex
     co-membership bipartite graph matrices stored in the apComplex
     package.

     The matrix that is returned will be an incidence matrix with yeast
     standard gene name indexing the rows and ad hoc protein complex
     names indexing the columns.

     The matrix that is obtained from apComplex database will be the
     multi-bait, multi-edge (MBME) estimate from each of the
     experiment. We have elected to take the MBME estimates rather than
     the cumulative estimates because the MBME's are generated from
     more statistically  significant data sets.

_V_a_l_u_e:

     BG Incidence Matrix with rows indexed by proteins and columns by
     complexes

_A_u_t_h_o_r(_s):

     Tony Chiang

_E_x_a_m_p_l_e_s:

     getAPMSData("Gavin")

