\HeaderA{createMipsMatrix}{A function to create the bipartite graph incidence matrix from
MIPS protein complexes}{createMipsMatrix}
\keyword{datagen}{createMipsMatrix}
\keyword{array}{createMipsMatrix}
\begin{Description}\relax
This function takes the output from the \code{\LinkA{getMipsInfo}{getMipsInfo}} function
and creates the bipartite graph incidence matrix where the rows are
indexed by proteins and colunms by protein complexes (given by the
MIPS ID's).
\end{Description}
\begin{Usage}
\begin{verbatim}
createMipsMatrix(mipsL)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{mipsL}] A list consisting of the two items: mipsL$Mips is a
named list of character vectors. The names correspond to MIPS
protein complexes and the character vector correspond to the
proteins within that complex; and mipsL$DESC is a named character
vector where the names are the protein complex MIPS ID and the
values is the description of the complex.
\end{ldescription}
\end{Arguments}
\begin{Value}
A bipartite graph incidence matrix of the MIPS protein complexes
where rows are indexed by proteins names  and colunms by the MIPS ID's
pre-fixed with "MIPS-".
\end{Value}
\begin{Author}\relax
Tony Chiang
\end{Author}
\begin{References}\relax
mips.gfs.de
\end{References}
\begin{Examples}
\begin{ExampleCode}
#mips= getMipsInfo(wantSubComplexes = FALSE)
#mipsM = createMipsMatrix(mips)
\end{ExampleCode}
\end{Examples}

