createGODataFrame           package:ScISI           R Documentation

_A _f_u_n_c_t_i_o_n _t_o _c_r_e_a_t_e _a _D_a_t_a_f_r_a_m_e _f_r_o_m _t_h_e _G_O _p_r_o_t_e_i_n _c_o_m_p_l_e_x_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     This function takes a named list (the names are the GO ID's
     representing some protein complex and the list elements are
     character vectors consisting of the members of each particular
     complex) and an Bipartite Graph Incidence Matrix and creates a
     dataframe with three columns: complex name, GO ID, and complex
     description.

_U_s_a_g_e:

     createGODataFrame(cMembers, goMat)

_A_r_g_u_m_e_n_t_s:

cMembers: Named list with GO ID's as names and character vector
          consisting of proteins of the respective complex

   goMat: Bipartite Graph Incidence Matrix

_D_e_t_a_i_l_s:

     This function takes the output parameters of 'createGOMatrix' and
     'getGOInfo' and creates the bipartite graph incidence matrix.

_V_a_l_u_e:

     Dataframe: 

   names: The names of the GO Complexes

      ID: The GO IDs' of the complexes

description: The description give by GO

_A_u_t_h_o_r(_s):

     Tony Chiang

_R_e_f_e_r_e_n_c_e_s:

     www.geneontology.org

_E_x_a_m_p_l_e_s:

     #go = getGOInfo(wantAllComplexes = FALSE)
     #goM = createGOMatrix(go)
     #createGODF(go, goM)

