edgeProp                package:ScISI                R Documentation

_A _f_u_n_c_t_i_o_n _t_o _e_s_t_i_m_a_t_e _t_h_e _e_d_g_e _p_r_o_p_o_r_t_i_o_n _o_f _a _y_2_h _i_n_d_u_c_e_d _g_r_a_p_h
_o_n _a _p_r_o_t_e_i_n _c_o_m_p_l_e_x

_D_e_s_c_r_i_p_t_i_o_n:

     This function first creates the Y2H symmetric adjacency matrix on
     a protein complex (as we ignore directionality). Then it
     calculates an estimate for the proportion of edges the complex
     might have with high probability (if the sampling is unbaised and
     without error). In addition to this statistic, it also generates
     an instance of graph, specifically a graphNEL, on the adjcency
     matrix.

_U_s_a_g_e:

     edgeProp(comp, compB2P, sampled)

_A_r_g_u_m_e_n_t_s:

    comp: A character vector of the constitutent members of the protein
          complex of interest

 compB2P: A named list; the names correspond to constituent proteins
          used as baits and the entries are the found hits (prey)

 sampled: A character vector of constituent members used as baits

_V_a_l_u_e:

   eProp: The estimated edge proportion of the complex

y2hGraph: A graphNEL instance of graph

_A_u_t_h_o_r(_s):

     T Chiang

