\HeaderA{getAPMSData}{A function to get the estimated complexes from high
throughput data determined by the package apComplex.}{getAPMSData}
\keyword{datagen}{getAPMSData}
\keyword{array}{getAPMSData}
\begin{Description}\relax
This function will generate the bipartite graph (BG) incidence matrix
from either the experiments of Gavin, Ho, or Krogan.
\end{Description}
\begin{Usage}
\begin{verbatim}
getAPMSData(author = NULL)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{author}] A character - name of the lead experimentor. It can be
either "Gavin", "Ho", or "Krogan"
\end{ldescription}
\end{Arguments}
\begin{Details}\relax
This function is called to gain access to the protein complex
co-membership bipartite graph matrices stored in the
apComplex package.

The matrix that is returned will be an incidence matrix with yeast
standard gene name indexing the rows and ad hoc protein complex names
indexing the columns.

The matrix that is obtained from apComplex database will be the
multi-bait, multi-edge (MBME) estimate from each of the experiment. We
have elected to take the MBME estimates rather than the cumulative
estimates because the MBME's are generated from more statistically 
significant data sets.
\end{Details}
\begin{Value}
BG Incidence Matrix with rows indexed by proteins and columns by complexes
\end{Value}
\begin{Author}\relax
Tony Chiang
\end{Author}
\begin{Examples}
\begin{ExampleCode}
getAPMSData("Gavin")
\end{ExampleCode}
\end{Examples}

