\HeaderA{checkComplex}{Function to check a list of protein complexes wrt ScISI}{checkComplex}
\keyword{datagen}{checkComplex}
\begin{Description}\relax
This function takes a named list of protein complexes (where
each protein complex name indexes an item of the list and each
list entry is the protein composition of the complex) and
an interactome (in the bi-partite matrix representation) and
checks to see if each complex of the list is either in the
interactome, a sub-complex of some complex(es) of the
interactome, or a super-complex of some complex(es) of the
interactome.
\end{Description}
\begin{Usage}
\begin{verbatim}
checkComplex(comps, interactome)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{comps}] A named list of protein complexes. The names
corresponds the protein complexes and the entries correspond
to the complex composition
\item[\code{interactome}] A bi-partite graph representation of
some interactome
\end{ldescription}
\end{Arguments}
\begin{Details}\relax
This is another QC function to check the participation of
certain protein complexes. The out-put will describe how
the various protein complexes in question relate to the
protein complexes of the interactome in question.
\end{Details}
\begin{Value}
A named list:
\begin{ldescription}
\item[\code{equal}] A named character vector - the name equals
the entry
\item[\code{subset}] A named char vector - the name is a subset
of the entry
\item[\code{superset}] A named char vector - the name is a superset
of the entry
\item[\code{sameNameNotEqual}] A named char vector - the name is
equal to the name of the entry but the composition is not
equal
\end{ldescription}
\end{Value}
\begin{Author}\relax
T Chiang
\end{Author}

