\HeaderA{graphSumStats}{An initiation function to generate graph statistics}{graphSumStats}
\keyword{datagen}{graphSumStats}
\begin{Description}\relax
This function takes an in silico interactome and a list of Y2H
experimental data (see details) and generates various graph summary
statistics.
\end{Description}
\begin{Usage}
\begin{verbatim}
graphSumStats(ISI, bait2PreyL)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{ISI}] An incidence matrix representation of a bi-partite graph of
an in silico interactome
\item[\code{bait2PreyL}] A list of y2h information. The data structure is
that of intactInfo.rda of the y2hStat package
\end{ldescription}
\end{Arguments}
\begin{Value}
\begin{ldescription}
\item[\code{complex}] A character vector of the constituent members of the
proteinn complex of interest
\item[\code{complexBait}] A character vector of those protein members which
were also tested as baits in the y2h experiment
\item[\code{notBait}] A character vector of those protein members which were
not tested as baits
\item[\code{avgDegOut}] The average out-degree of the bait proteins of the
complex of interest
\item[\code{notIsolated}] A character vector of proteins that showed
experimental binary affiliation for some other complex member
\item[\code{y2hGraph}] An instance of the class graph; a graphNEL induceds
Y2H graph on the protein complex
\item[\code{popMeanDegree}] The population mean degree derived from the
bait proteins
\item[\code{edgeProp}] The estimated edge proportions derived between
undirected Y2H edges
\item[\code{degBait}] A named list; each name corresponds to each member of
the protein complex with the entry the number of proteins to which
it is adjacent
\end{ldescription}
\end{Value}
\begin{Author}\relax
T Chiang
\end{Author}

