createGOMatrix             package:ScISI             R Documentation

_A _f_u_n_c_t_i_o_n _t_o _c_r_e_a_t_e _t_h_e _b_i_p_a_r_t_i_t_e _g_r_a_p_h (_B_G) _i_n_c_i_d_e_n_c_e _m_a_t_r_i_x
_f_r_o_m _t_h_e _p_r_o_t_e_i_n _c_o_m_p_l_e_x_e_s _p_a_r_s_e_d _f_r_o_m _t_h_e _G_O _D_a_t_a_b_a_s_e

_D_e_s_c_r_i_p_t_i_o_n:

     This function takes the output from the 'getGOInfo' function and
     creates the bipartite graph (BG) incidence matrix from the output.

_U_s_a_g_e:

     createGOMatrix(cMembers)

_A_r_g_u_m_e_n_t_s:

cMembers: A named list consisting of vectors. Each list item is named
          by a protein complex GO ID and points to a character vector
          where each character vector consists of the proteins
          composing of that protein complex.

_V_a_l_u_e:

     A bipartite graph matrix of the corresponding GO protein complexes
     where the rows are indexed by the protein names and the colunms by
     GO ID's.

_A_u_t_h_o_r(_s):

     Tony Chiang

_E_x_a_m_p_l_e_s:

     #cMembers = getGOInfo(wantAllComplexes = FALSE)
     #createGOMatrix(cMembers)

