runAlignment              package:ScISI              R Documentation

_A _f_u_n_c_t_i_o_n _t_o _e_s_t_a_b_l_i_s_h _p_r_e_l_i_m_i_n_a_r_i_e_s _f_o_r _t_h_e
_c_o_m_p_B_i_j_e_c_t_i_o_n _f_u_n_c_t_i_o_n.

_D_e_s_c_r_i_p_t_i_o_n:

     This function creates the record keeping bijMat and calls the
     'compBijection' function.

_U_s_a_g_e:

     runAlignment(TSNMat, estMat, c2kMat)

_A_r_g_u_m_e_n_t_s:

  TSNMat: The first bipartite graph matrix

  estMat: The second bipartite graph matrix

  c2kMat: The matrix of similarity index between TSNMat and estMat

_V_a_l_u_e:

     The matrix bijMat with an alignment calculated by the function
     'compBijection'

_A_u_t_h_o_r(_s):

     Tony Chiang

_E_x_a_m_p_l_e_s:

     #go = getGOInfo()
     #mips = getMipsInfo()
     #goM = createGOMatrix(go)
     #mipsM = createMipsMatrix(mips)
     #cc = runCompareComplex(mipsM, goM, byWhich = "ROW")
     #align = runAlignment(mipsM, goM, cc$simInd)

