ScISI2html               package:ScISI               R Documentation

_A _f_u_n_c_t_i_o_n _t_h_a_t _g_e_n_e_r_a_t_e_s _a_n _h_t_m_l _p_a_g_e _f_o_r _t_h_e _G_O _a_n_d _M_I_P_s
_p_r_o_t_e_i_n _c_o_m_p_l_e_x_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     This function takes a vector or url's and a vector of the protein
     complex description names (known names of the protein complexes)
     and creates an html file that lets the user link to each of the
     protein complex description site based on the particular url.

_U_s_a_g_e:

     ScISI2html(urlVect, linkName, filename, title,
     othernames, table.head, table.center = TRUE, compSize=NULL)

_A_r_g_u_m_e_n_t_s:

 urlVect: A character vector containing the url for each speficied
          protein complex

linkName: A character vector containing a description name for each of
          the url's in urlVect that will be the anchor for the url

filename: The output file; an html file written to the home directory

   title: The title given to the html file

othernames: Other titles that are needed; sub-titles

table.head: The title for the table

table.center: Logical; to center the table

compSize: A numeric vector of the complex sizes for the various protein
          complexes of GO and MIPS

_V_a_l_u_e:

     An html file written to the user's home directory. The file
     contains a page of links (given by the url's) where each link is
     anchored by a description name for each url.

_A_u_t_h_o_r(_s):

     Tony Chiang

_E_x_a_m_p_l_e_s:

     #go = getGOInfo(wantAllComplexes = FALSE)
     #goM = createGOMatrix(go)
     #goDF = createGODataFrame(go, goM)
     #goOb = createYeastDataObj(goDF)
     #goNames = colnames(goM)
     #url = vector(length = length(goNames))
     #for(i in 1:length(goNames)){
     #   url[i] = getURL(goOb, goNames[i])
     #}
     #ScISI2html(url, goNames, test, GO Complexes)

