# Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations

## Documentation for package ‘SPIA’ version 1.0.0

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

ALL_Colorectal | Results from a microarray expriment comparing colorectal cancer samples and normal tissue samples.
ALL_Vessels | Results from a microarray expriment comparing umbilical veins and arteries tissues
colorectalcancer | Results from a microarray expriment comparing colorectal cancer samples and normal tissue samples.
DE_Colorectal | Results from a microarray expriment comparing colorectal cancer samples and normal tissue samples.
DE_Vessels | Results from a microarray expriment comparing umbilical veins and arteries tissues
plotP | SPIA two-way evidence plot
spia | Signaling Pathway Impact Analysis (SPIA) based on over-representation and signaling perturbations accumulation
top | Results from a microarray expriment comparing colorectal cancer samples and normal tissue samples.
Vessels | Results from a microarray expriment comparing umbilical veins and arteries tissues