parameter               package:CALIB               R Documentation

_C_a_l_i_b_r_a_t_i_o_n _M_o_d_e_l _p_a_r_a_m_e_t_e_r: _P_a_r_a_m_e_t_e_r_L_i_s_t _E_x_a_m_p_l_e

_D_e_s_c_r_i_p_t_i_o_n:

     This 'ParameterList' object represents calibration  model
     parameters of two arrays. It was estimated from the dataset
     'spike' by the function 'estimateParameter' in the CALIB package.

_U_s_a_g_e:

     data(parameter)

_F_o_r_m_a_t:

     'parameter' is a 'ParameterList' object containing the following
     list  components:$MuS,$Ka,
     $P1,$P2,$SigmaA,$SigmaM,$SigmaS,$SpotError,$Method with two
     subfields $Method$BC and $Method$Area, $ErrorModel and $genes.
     Among these parameters,P1,P2 and SigamA are different for
     different dyes.

_R_e_f_e_r_e_n_c_e_s:

     dataset 'spike'.

     Engelen, K., Naudts, B., DeMoor, B., Marchal, K. (2006)  A
     calibration method for estimating absolute expression levels from 
     microarray data. Bioinformatics  22: 1251-1258.

     Hilson,P.,et al. (2004) Versatile gene-specific sequence tags for 
     Arabidopsis functional genomics: transcript profiling and reverse
     genetics applications. Genome Res. 14, 2176-2189.

_E_x_a_m_p_l_e_s:

     data(parameter)

