spike                 package:CALIB                 R Documentation

_E_x_p_e_r_i_m_e_n_t _D_a_t_a: _S_p_i_k_e_L_i_s_t _E_x_a_m_p_l_e

_D_e_s_c_r_i_p_t_i_o_n:

     This 'SpikeList' object contains all the spikes in dataset 'RG'.It
     is generated by the function
      'read.spike' from 'RG' and user-specified concentraion file in
     the CALIB package.

_U_s_a_g_e:

     data(spike)

_F_o_r_m_a_t:

     'spike' is an 'SpikeList' object containing the following list
     components: $R,$G,$Rb,$Gb,
     $RArea,$GArea,$RConc,$GConc and $genes. It represents two
     microarrays and 600 spikes, including 480 calibration controls, 96
     ratio controls and 24 negative controls.

_S_o_u_r_c_e:

     For the source information, see the introduction of dataset 'RG'.

_R_e_f_e_r_e_n_c_e_s:

     dataset 'RG'.

     Engelen, K., Naudts, B., DeMoor, B., Marchal, K. (2006)  A
     calibration method for estimating absolute expression levels from 
     microarray data. Bioinformatics  22: 1251-1258.

     Hilson,P.,et al. (2004) Versatile gene-specific sequence tags for 
     Arabidopsis functional genomics: transcript profiling and reverse
     genetics applications. Genome Res. 14, 2176-2189.

_E_x_a_m_p_l_e_s:

     data(spike)

     plotSpikeRG(spike,array=1)

