\HeaderA{spike}{Experiment Data: SpikeList Example}{spike}
\keyword{datasets}{spike}
\begin{Description}\relax
This \code{\LinkA{SpikeList}{SpikeList}} object contains all the spikes in dataset
\code{\LinkA{RG}{RG}}.It is generated by the function\\ \code{\LinkA{read.spike}{read.spike}}
from \code{RG} and user-specified concentraion file in the CALIB package.
\end{Description}
\begin{Usage}
\begin{verbatim}data(spike)\end{verbatim}
\end{Usage}
\begin{Format}\relax
\code{spike} is an \code{SpikeList} object containing the following list components:
\$R,\$G,\$Rb,\$Gb,\\\$RArea,\$GArea,\$RConc,\$GConc and \$genes. It represents two
microarrays and 600 spikes, including 480 calibration controls, 96 ratio
controls and 24 negative controls.
\end{Format}
\begin{Source}\relax
For the source information, see the introduction of dataset \code{RG}.
\end{Source}
\begin{References}\relax
dataset \code{RG}.

Engelen, K., Naudts, B., DeMoor, B., Marchal, K. (2006) 
A calibration method for estimating absolute expression levels from 
microarray data. Bioinformatics  22: 1251-1258.

Hilson,P.,et al. (2004) Versatile gene-specific sequence tags for 
Arabidopsis functional genomics: transcript profiling and reverse
genetics applications. Genome Res. 14, 2176-2189.
\end{References}
\begin{Examples}
\begin{ExampleCode}
data(spike)

plotSpikeRG(spike,array=1)
\end{ExampleCode}
\end{Examples}

