RG                   package:CALIB                   R Documentation

_E_x_p_e_r_i_m_e_n_t _D_a_t_a: _R_G_L_i_s_t__C_A_L_I_B _E_x_a_m_p_l_e

_D_e_s_c_r_i_p_t_i_o_n:

     This 'RGList_CALIB' object represents microarray data of two
     arrays. It is generated by function 'read.rg' from raw data files.

_U_s_a_g_e:

     data(RG)

_F_o_r_m_a_t:

     'RG' is an 'RGList_CALIB' object containing the following list
     components: $R,$G,$Rb,$Gb,
     $RArea,$GArea,$targets,$source and $genes. It represents two
     microarrays and 19749 clones.

_S_o_u_r_c_e:

     This comes from a publicly avaible dataset, consisting 14
     hybridizations. From this 'RG', two out of these fourteen are
     chosen. The experiment design  of these two are color flip. Except
     for cDNA probes, external control spikes  are also spotted on the
     arrays. There are 192 ratio controls, 480 calibration  controls,24
     negative controls and 72 utility controls.

     For more information, see the reference.

_R_e_f_e_r_e_n_c_e_s:

     Engelen, K., Naudts, B., DeMoor, B., Marchal, K. (2006)  A
     calibration method for estimating absolute expression levels from 
     microarray data. Bioinformatics  22: 1251-1258.

     Hilson,P.,et al. (2004) Versatile gene-specific sequence tags for 
     Arabidopsis functional genomics: transcript profiling and reverse
     genetics applications. Genome Res. 14, 2176-2189.

_E_x_a_m_p_l_e_s:

     data(RG)

