plotSpec-methods            package:xcms            R Documentation

_P_l_o_t _m_a_s_s _s_p_e_c_t_r_a _f_r_o_m _t_h_e _p_r_o_f_i_l_e _m_a_t_r_i_x

_D_e_s_c_r_i_p_t_i_o_n:

     Uses the pre-generated profile mode matrix to plot mass spectra
     over a specified retention time range.

_A_r_g_u_m_e_n_t_s:

  object: the 'xcmsRaw' object

   ident: logical, use mouse to identify and label peaks

   vline: numeric vector with locations of vertical lines

     ...: arguments passed to 'profRange'

_V_a_l_u_e:

     If 'ident == TRUE', an integer vector with the indecies of the
     points that were identified. Otherwise a two-column matrix with
     the plotted points.

_M_e_t_h_o_d_s:


     _o_b_j_e_c_t = "_x_c_m_s_R_a_w" 'plotSpec(object, ident = FALSE, vline =
          numeric(0), ...)'


_S_e_e _A_l_s_o:

     'xcmsRaw-class'

