\HeaderA{xcmsFragments}{Constructor for xcmsFragments objects which holds Tandem MS
peaks}{xcmsFragments}
\keyword{file}{xcmsFragments}
\begin{Description}\relax
EXPERIMANTAL FEATURE

xcmsFragments is an object similar to xcmsSet, which holds peaks
picked (or collected) from one or several xcmsRaw objects.

There are still discussions going on about the exact API for MS$\textasciicircum{}n$
data, so this is likely to change in the future. The code is not yet
pipeline-ified.
\end{Description}
\begin{Usage}
\begin{verbatim}
xcmsFragments(xs, ...)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{xs}] A \code{\LinkA{xcmsSet-class}{xcmsSet.Rdash.class}} object which contains
picked ms1-peaks from one or several experiments
\item[\code{...}] further arguments to the \code{collect} method

\end{ldescription}
\end{Arguments}
\begin{Details}\relax
After running collect(xFragments,xSet) The peaktable of the
xcmsFragments includes the ms1Peaks from all experinemts stored in a
xcmsSet-object. Further it contains the relevant MSn-peaks from the
xcmsRaw-objects, which were created temporarily with the paths in
xcmsSet.
\end{Details}
\begin{Value}
An \code{xcmsFragments} object.
\end{Value}
\begin{Author}\relax
Joachim Kutzera, Steffen Neumann, \email{sneumann@ipb-halle.de}
\end{Author}
\begin{SeeAlso}\relax
\code{\LinkA{xcmsFragments-class}{xcmsFragments.Rdash.class}},
\code{\LinkA{collect}{collect}}
\end{SeeAlso}

