\HeaderA{rawMat-methods}{Get a raw data matrix}{rawMat.Rdash.methods}
\aliasA{rawMat}{rawMat-methods}{rawMat}
\aliasA{rawMat,xcmsRaw-method}{rawMat-methods}{rawMat,xcmsRaw.Rdash.method}
\keyword{methods}{rawMat-methods}
\begin{Description}\relax
Returns a matrix with columns for time, m/z, and intensity that
represents the raw data from a chromatography mass spectrometry experiment.
\end{Description}
\begin{Arguments}
\begin{ldescription}
\item[\code{object}] The container of the raw data
\item[\code{mzrange}] Subset by m/z range
\item[\code{rtrange}] Subset by retention time range
\item[\code{scanrange}] Subset by scan index range
\item[\code{log}] Whether to log transform the intensities
\end{ldescription}
\end{Arguments}
\begin{Value}
A numeric matrix with three columns: time, mz and intensity.
\end{Value}
\begin{Section}{Methods}
\describe{

\item[object = "xcmsRaw"] \code{rawMat(object, mzrange = numeric(), rtrange = numeric(),
      scanrange = numeric(), log=FALSE)}

}
\end{Section}
\begin{Author}\relax
Michael Lawrence
\end{Author}
\begin{SeeAlso}\relax
\code{\LinkA{plotRaw}{plotRaw}} for plotting the raw intensities
\end{SeeAlso}

