comparisonPlot          package:tilingArray          R Documentation

_P_l_o_t _a _v_e_r_t_i_c_a_l _l_a_y_o_u_t _o_f _p_a_n_e_l_s _f_o_r _t_h_e _c_o_m_p_a_r_i_s_o_n _o_f _d_i_f_f_e_r_e_n_t
_a_l_o_n_g-_c_h_r_o_m_o_s_o_m_e _p_r_o_f_i_l_e_s.

_D_e_s_c_r_i_p_t_i_o_n:

     This function is used for Figure 5 in the David et al. (PNAS 2006)
     paper and in the Huber et al. methods paper.

_U_s_a_g_e:

     comparisonPlot(x, y, xscale=range(x), yscale, anno, ticks, pch=20, cex=1, bgcol="#f2f2f2")

_A_r_g_u_m_e_n_t_s:

       x: numeric vector.

       y: list of numeric vector, each of same length as 'x'.

  xscale: numeric vector of length 2.

  yscale: matrix with 2 rows and columns corresponding to the elements
          of 'x'.

    anno: dataframe with columns 'start', 'end', and 'name', each row
          corresponds to one gene CDS to be plotted at the bottom.

   ticks: numeric vector, where to plot the ticks.

     pch: A numeric or character vector indicating what sort of
          plotting symbol to use, see 'grid.points'.

     cex: Multiplier applied to fontsize, see 'gpar'.

   bgcol: Color to use as background for some of the plot panels.

_V_a_l_u_e:

     Function is called for its side-effect.

_A_u_t_h_o_r(_s):

     W. Huber huber@ebi.ac.uk

_R_e_f_e_r_e_n_c_e_s:

     ...

_E_x_a_m_p_l_e_s:

       ##

