# Hidden Variable Dynamic Modeling

## Documentation for package ‘rHVDM’ version 1.10.1

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

estimerrors | computes the standard deviation of the measurement error using pre-calculated tables specific to the plattform or user-defined table
fitgene | Fits the optimal kinetic parameter values for a particular gene.
fitgene.lin | Fits the optimal kinetic parameter values for a particular gene.
fitgene.nl | Fits the optimal kinetic parameter values for a particular gene and model.
fiveGyMAS5 | Example data for the rHVDM package (time course of irradiated human T cells)
genestoscreen | Genes differentially expressed
HVDMcheck | Checks that an object of class ExpressionSet is compliant with HVDM
HVDMreport | generates an HTML report using the input
leastnoisychips | Identifiers of the three least noisy arrays in the p53 experiment
p53traingenes | Known p53 targets
rHVDMplattforms | plattform-specific repository allowing to estimate measurement errors
screening | Fits the optimal kinetic parameter values for several genes.
screening.nl | Fits the optimal kinetic parameter values for several genes with a nonlinear model.
training | Performs the HVDM training step and returns a list containing the results
training.nl | Performs the HVDM training step and returns a list containing the results
twodosesMAS5 | Example data for the rHVDM package (time course of irradiated human T cells, two different doses)