variantSI           package:oneChannelGUI           R Documentation

_T_h_i_s _f_u_n_c_t_i_o_n _a_l_l_o_w_s _f_i_l_t_e_r_i_n_g _o_n _t_h_e _b_a_s_i_s _o_f _v_a_r_i_a_n_t _e_x_o_n_s

_D_e_s_c_r_i_p_t_i_o_n:

     The function interesects a list of alternative splice exon-level
     probe sets detected by oneChannelGUI analysis and intersects it to
     the list of exon-level probe sets associated to variant exons,
     i.e. these exons that are associated only to a subset of all
     isoforms associated to a gene. The table of variant Exon is stored
     in RRE database and is retrieved by the function updating the UCSC
     tables linking probe set ids with variant exons, located in the
     General Tools menu. The variantSI function also attaches to the
     variant exons table the deltaSI associated exon-level probe set.

_U_s_a_g_e:

     variantSI()

_N_o_t_e:

     This fuction needs the presence of Splice Index

_A_u_t_h_o_r(_s):

     Raffaele A Calogero

_S_e_e _A_l_s_o:

     variantExons, plotVariantSI

