exonTopTableExtract      package:oneChannelGUI      R Documentation

_E_x_t_r_a_c_t_s _d_a_t_a _o_n _t_h_e _b_a_s_i_s _o_f _a _d_e_f_i_n_e_d _t-_t_e_s_t _r_e_g_u_l_a_r_i_z_e_d _p-_v_a_l_u_e

_D_e_s_c_r_i_p_t_i_o_n:

     This function filters the data produced by exonContrasts to
     extract a list of alternative spliced exons that are saved in a
     file and they can be used for further analysis, i.e. extracting
     only variant exons. The function also filter the data present in
     the onechannelGUI project bot at gene and exon-level.

_U_s_a_g_e:

     exonTopTableExtract()

_D_e_t_a_i_l_s:

     It is important to note that if multiple contrasts should be
     considered after the calculation of each of them it is essential
     to extract the alternative spliced exons with exonTopTableExtract,
     because everytime exonContrasts is run it overwrites the previous
     results.

_A_u_t_h_o_r(_s):

     Raffaele A Calogero

