\HeaderA{variantSI}{This function allows filtering on the basis of variant exons}{variantSI}
\keyword{manip}{variantSI}
\begin{Description}\relax
The function interesects a list of alternative splice exon-level probe sets detected by oneChannelGUI analysis
and intersects it to the list of exon-level probe sets associated to variant exons, i.e. these exons that are associated
only to a subset of all isoforms associated to a gene. The table of variant Exon is stored in RRE database and is retrieved by
the function updating the UCSC tables linking probe set ids with variant exons, located in the General Tools menu.
The variantSI function also attaches to the variant exons table the deltaSI associated exon-level probe set.
\end{Description}
\begin{Usage}
\begin{verbatim}
variantSI()
\end{verbatim}
\end{Usage}
\begin{Note}\relax
This fuction needs the presence of Splice Index
\end{Note}
\begin{Author}\relax
Raffaele A Calogero
\end{Author}
\begin{SeeAlso}\relax
variantExons, plotVariantSI
\end{SeeAlso}

