\HeaderA{exonContrasts}{Defining t-test regularized p-values}{exonContrasts}
\keyword{utilities}{exonContrasts}
\begin{Description}\relax
This function constructs the contrasts as affylmGUI but applied to exon-level. It
also perfoms Bayes regularization. Raw p-values are plotted to see if BH or BY type I
error correction can be applied. Corrected p-values are saved and used for extraction of
alternative spliced exons.
\end{Description}
\begin{Usage}
\begin{verbatim}exonContrasts()\end{verbatim}
\end{Usage}
\begin{Details}\relax
It is important to note that if multiple contrasts should be considered after the calculation of each of them
it is essential to extract the alternative spliced exons with exonTopTableExtract, because everytime exonContrasts
is run it overwrites the previous results.
\end{Details}
\begin{Author}\relax
Raffaele A Calogero
\end{Author}

