masigpro.edesign        package:oneChannelGUI        R Documentation

_T_h_e _f_u_n_c_t_i_o_n _c_r_e_a_t_e_s _a_n _e_d_e_s_i_g_n _o_b_j_e_c_t _n_e_e_d_e_d _t_o _r_u_n _m_a_S_i_g_P_r_o

_D_e_s_c_r_i_p_t_i_o_n:

     The function creates an edesign object needed to run maSigPro. To
     know more about edesign object  see maSigPro help.  This function
     uses a specific configuration of Target column of the affylmGUI
     target file. To know more about target file see affylmGUI help.
     Each row of the column named Target, in the affylmGUI target file,
     describes the array on the basis of the experimental design. Each
     element needed for the construction of edesign is separated from
     the others by an underscore.  The first three elements of the row
     are fixed and represent Time Replicate Control all separated by an
     underscore: 'Time_Replicate_Control'. All the other elements refer
     to various experimental conditions. Considering two different
     conditions to be evaluated each row is made of 5 elements:
     'Time_Replicate_Control_cond1_cond2' all separated by an
     underscore. Having an experiment made of 9 arrays, with two time
     points, 0h and 24h, in triplicate, and two different experimental
     conditions to be evaluated, the affylmGUI target file will look
     like:

       Name  FileName  Target
       mC1   M1.CEL    '0_1_1_0_0'
       mC2   M4.CEL    '0_1_1_0_0'
       mC3   M7.CEL    '0_1_1_0_0'
       mE1   M3.CEL    '24_2_0_1_0'
       mE2   M6.CEL    '24_2_0_1_0'
       mE3   M9.CEL    '24_2_0_1_0'
       mI1   M2.CEL    '24_3_0_0_1'
       mI2   M5.CEL    '24_3_0_0_1'
       mI3   M8.CEL    '24_3_0_0_1'

_U_s_a_g_e:

     masigpro.edesign()

_A_u_t_h_o_r(_s):

     Raffaele A Calogero

_S_e_e _A_l_s_o:

     masigpro, masigpro.view

