exonContrasts         package:oneChannelGUI         R Documentation

_D_e_f_i_n_i_n_g _t-_t_e_s_t _r_e_g_u_l_a_r_i_z_e_d _p-_v_a_l_u_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     This function constructs the contrasts as affylmGUI but applied to
     exon-level. It also perfoms Bayes regularization. Raw p-values are
     plotted to see if BH or BY type I error correction can be applied.
     Corrected p-values are saved and used for extraction of
     alternative spliced exons.

_U_s_a_g_e:

     exonContrasts()

_D_e_t_a_i_l_s:

     It is important to note that if multiple contrasts should be
     considered after the calculation of each of them it is essential
     to extract the alternative spliced exons with exonTopTableExtract,
     because everytime exonContrasts is run it overwrites the previous
     results.

_A_u_t_h_o_r(_s):

     Raffaele A Calogero

