oneChannelGUI {oneChannelGUI} | R Documentation

## Starting oneChannelGUI package

### Description

Starting oneChannelGUI package. oneChannelGUI contains a set of functions extending the capabilities of affylmGUI package

### Usage

    AboutextendedaffylmGUI()
    AboutaffylmGUI()
    oneChannelGUI()
    oneChannelGUIHelp()
    maSigProHelp()
    siggenesHelp()
    oneChannelGUIHelp()
    initialize.extAffylmGUI()
    OpenExonandTargetsfiles()
    GOstatsHelp()
    NewLimmaFile()
    OpenLimmaFile()
    OpenALimmaFile(FileName)
    OpenAFile(FileName)
    OpenExonFile()
    OpenLargeFile()
    changeMenu()
    oneChannelGUI.start()
    libraryFilesDir()
    whichKindOfArray()
    intronicBg()
    ExportNormalizedExpressionValues1()
    ExportNormalizedExpressionValues()
    ExportfeatureNames()
    SaveAsLimmaFile()
    addAnnLib()
    OpenCDFandTargetsfiles()
    ComputeLinearModelFit()
    GetNormalizationMethod()
    NormalizeNow()
    ComputeContrasts()
    midasFilter()
    dabgFilter()
    largedatasetNorm()
    RankProdHelp()
    affyPLMHelp()
    genefilterHelp()
    pamrHelp()
    pdmclassHelp()
    sizepowerHelp()
    ssizeHelp()
    OpenAGeoFile(FileName)
    OpenGeoFile()
    OpenGeoFiles()
    recoverUnfiltered()
    delete.ML()
    affyPlotMA()
    changes()
    aptFolder()
    deleteLocalData()
    SetED()
    chooseEDir()
    .annotation(eset)
    .myrk(x,df)

### Arguments

`FileName` | Internal argument not to be set by the user
`eset` | Internal argument not to be set by the user
`x` | Internal argument not to be set by the user
`df` | Internal argument not to be set by the user

### Details

This function launches a modify version of the Graphical User Interface by James Wettenhall for the limma package by Gordon Smyth. The GUI uses Tk widgets (via the R TclTk interface by Peter Dalgaard) in order to provide a simple interface to various tools for quality control and statistical analysis of Affymetrix gene chips.

### Author(s)

Raffaele A Calogero

### Examples

    #  library(oneChannelGUI)
    ## To start the affylmGUI with the modifications
    #oneChannelGUI()

[Package oneChannelGUI version 1.10.11 Index]