addControlData2lumi           package:lumi           R Documentation

_A_d_d _t_h_e _c_o_n_t_r_o_l _p_r_o_b_e _d_a_t_a _i_n_t_o _t_h_e _c_o_n_t_r_o_l_D_a_t_a _s_l_o_t _o_f _L_u_m_i_B_a_t_c_h _o_b_j_e_c_t

_D_e_s_c_r_i_p_t_i_o_n:

     Add the control probe profile data, outputted by BeadStudio, into
     the controlData slot of LumiBatch object.

_U_s_a_g_e:

     addControlData2lumi(controlData, x.lumi)

_A_r_g_u_m_e_n_t_s:

controlData: the control data can be a data.frame or the control probe
          filename outputted by BeadStudio 

  x.lumi: a LumiBatch object, to which controlData will be added. 

_D_e_t_a_i_l_s:

     The controlData slot in LumiBatch object is a data.frame with
     first two columns as "controlType" and "ProbeID". The rest columns
     are the expression amplitudes for individual samples.

_V_a_l_u_e:

     Return the LumiBatch object with controlData slot filled.

_A_u_t_h_o_r(_s):

     Pan Du

_S_e_e _A_l_s_o:

     'getControlData', 'plotControlData'

_E_x_a_m_p_l_e_s:

             ## Not runnable
             # controlFile <- 'Control_Probe_Profile.txt'
             # x.lumi <- addControlData2lumi(controlFile, x.lumi)

