IlluminaID2nuID             package:lumi             R Documentation

_M_a_t_c_h_i_n_g _I_l_l_u_m_i_n_a _I_D_s _t_o _n_u_I_D _b_a_s_e_d _o_n _I_l_l_u_m_i_n_a _I_D _m_a_p_p_i_n_g _l_i_b_r_a_r_y

_D_e_s_c_r_i_p_t_i_o_n:

     Matching Illumina IDs to nuID based on Illumina ID mapping
     libraries.

_U_s_a_g_e:

     IlluminaID2nuID(IlluminaID, lib.mapping=NULL, species = c("Human", "Mouse", "Rat", "Unknown"), chipVersion = NULL, ...)

_A_r_g_u_m_e_n_t_s:

IlluminaID: a vector of Illumina IDs 

lib.mapping: the ID mapping library. If it is provided, the parameter
          "species" will be ignored. 

 species: the species of the chip designed for. If users do not know
          it, it can be set as "Unknown". 

chipVersion: chipVersion information returned by function 'getChipInfo'            

     ...: other parameters of 'getChipInfo' 

_D_e_t_a_i_l_s:

     When the parameter "chipVersion" is not provided, this function
     basically returned the "idMapping" item returned by function
     'getChipInfo'.

_V_a_l_u_e:

     The mapping information from Illumina ID to nuID. It will be a
     matrix with each column corresponding to one matched manifest file
     when parameter "returnAllMatches" is TRUE. In this case, the
     columns are sorted from the best match to worst. If IlluminaID is
     NULL and chipVersion is provided, it will return all mapping
     information of the chip.

_A_u_t_h_o_r(_s):

     Pan Du

_S_e_e _A_l_s_o:

     'getChipInfo', 'nuID2IlluminaID'

