plotStringencyGene           package:lumi           R Documentation

_p_l_o_t _t_h_e _S_t_r_i_n_g_e_n_c_y _r_e_l_a_t_e_d _c_o_n_t_r_o_l _p_r_o_b_e _p_r_o_f_i_l_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     Plot the Stringency related control probe (Low-Stringency,
     Medium-Stringency and High-Stringency) profiles. Using
     getControlType function to view available stringency types.

_U_s_a_g_e:

     plotStringencyGene(controlData, lib = NULL, slideIndex = NULL, addLegend = TRUE, logMode = TRUE, ...)

_A_r_g_u_m_e_n_t_s:

controlData: a LumiBatch object including control data or a control
          data data.frame 

     lib: the annotation library (for retrieving the gene name) 

slideIndex: the slide index or ID corresponding to each sample 

addLegend: whether add legend or not 

 logMode: whether show the data in log2 scale  

     ...: other parameters used by default matplot function 

_V_a_l_u_e:

     plot the picture and return TRUE if everything is OK

_A_u_t_h_o_r(_s):

     Pan Du

_S_e_e _A_l_s_o:

     'addControlData2lumi', 'plotControlData'

_E_x_a_m_p_l_e_s:

             controlFile <- system.file('doc', 'Control_Probe_Profile.txt', package='lumi')
             controlData <- getControlData(controlFile)
             plotStringencyGene(controlData)

