getNuIDMappingInfo           package:lumi           R Documentation

_g_e_t _t_h_e _m_a_p_p_i_n_g _i_n_f_o_r_m_a_t_i_o_n _f_r_o_m _n_u_I_D _t_o _R_e_f_S_e_q _I_D

_D_e_s_c_r_i_p_t_i_o_n:

     Get the mapping information (including mapping quality
     information) of nuIDs to the most recent RefSeq release. These
     information was kept in the IDMapping libraries.

_U_s_a_g_e:

     getNuIDMappingInfo(nuID = NULL, lib.mapping)

_A_r_g_u_m_e_n_t_s:

    nuID: a vector of nuIDs. If it is NULL, all mappings will be
          returned. 

lib.mapping: the ID mapping library 

_D_e_t_a_i_l_s:

     The function basically return the nuID mapping information kept in
     the "nuID_MappingInfo" table of IDMapping libraries
     (lumiHumanIDMapping, lumiMouseIDMapping, lumiRatIDMapping). For
     more details of nuID mapping, please refer to the help of
     corresponding IDMapping library.

_V_a_l_u_e:

     It returns a data.frame with each row corresponding to an input
     nuID.

_A_u_t_h_o_r(_s):

     Warren Kibbe, Pan Du, Simon Lin

_E_x_a_m_p_l_e_s:

             ## load example data
             data(example.lumi)
             if (require(lumiHumanIDMapping)) {
                     nuIDs <- featureNames(example.lumi)
                     mappingInfo <- getNuIDMappingInfo(nuIDs, lib.mapping='lumiHumanIDMapping')
                     head(mappingInfo)
             }

