lumi-package              package:lumi              R Documentation

_A _p_a_c_k_a_g_e _f_o_r _p_r_e_p_r_o_c_e_s_s_i_n_g _I_l_l_u_m_i_n_a _m_i_c_r_o_a_r_r_a_y _d_a_t_a

_D_e_s_c_r_i_p_t_i_o_n:

     lumi R package is designed to preprocess the Illumina microarray
     (BeadArray) data. It includes functions of Illumina data input,
     quality control, variance stabilization, normalization and gene
     annotation.

_D_e_t_a_i_l_s:


       Package:  lumi
       Type:     Package
       Version:  1.1.0
       Date:     2007-03-23
       License:  LGPL version 2 or newer

_A_u_t_h_o_r(_s):

     Pan Du, Simon Lin Maintainer: Pan Du <dupan@northwestern.edu>

_R_e_f_e_r_e_n_c_e_s:

     1. Du, P., Kibbe, W.A. and Lin, S.M., (2008) 'lumi: a pipeline for
     processing Illumina microarray', Bioinformatics 24(13):1547-1548

     2. Lin, S.M., Du, P., Kibbe, W.A., (2008) 'Model-based 
     Variance-stabilizing Transformation for Illumina Microarray Data',
     Nucleic Acids Res. 36, e11

     3. Du, P., Kibbe, W.A. and Lin, S.M., (2007) 'nuID: A universal
     naming schema of oligonucleotides for Illumina, Affymetrix, and
     other microarrays', Biology Direct, 2, 16

