ORF2Entrez           package:gene2pathway           R Documentation

_C_o_n_v_e_r_s_i_o_n _l_o_c_u_s _t_a_g -> _E_n_t_r_e_z _I_D _a_n_d _E_n_t_r_e_z _I_D -> _l_o_c_u_s _t_a_g _a_c_c_o_r_d_i_n_g _t_o _K_E_G_G

_D_e_s_c_r_i_p_t_i_o_n:

     Conversion locus tag -> Entrez ID and Entrez ID -> locus tag
     according to KEGG (see
     <URL:ftp://ftp.genome.jp/pub/kegg/genes/organisms/>)

_U_s_a_g_e:

             ORF2Entrez(ORFIDs, organism="dme")
             Entrez2ORF(entrezIDs, organism="dme")

_A_r_g_u_m_e_n_t_s:

  ORFIDs: character vector of locus tags / ORF identifiers

organism: KEGG letter code describing an organism.  Please refer to
          <URL:http://www.genome.jp/kegg-bin/create_kegg_menu> for a
          complete list of organisms (and their letter codes) supported
          by KEGG.

entrezIDs: character vector of Entrez gene IDs

_V_a_l_u_e:

     character vector

_E_x_a_m_p_l_e_s:

             entrez=ORF2Entrez("Dmel_CG4942", organism="dme")
             Entrez2ORF(entrez, organism="dme") # should be "Dmel_CG4942"

