\HeaderA{plotDensities}{Plot Densities}{plotDensities}
\aliasA{plotDensities,Codelink-method}{plotDensities}{plotDensities,Codelink.Rdash.method}
\keyword{documentation}{plotDensities}
\keyword{utilities}{plotDensities}
\begin{Description}\relax
Takes a Codelink object and plot the distributions of intensities.
\end{Description}
\begin{Usage}
\begin{verbatim}
plotDensities(object, subset=1:dim(object)[2], title=NULL,
    legend.cex=1, what=NULL)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{object}] an object of class "Codelink".
\item[\code{subset}] subset of arrays to be plotted (default: all).
\item[\code{title}] title of the plot.
\item[\code{legend.cex}] font factor use in legend to fit.
\item[\code{what}] what data to plot, may be "bg", "smean", "snr", "ri" or "ni"
\end{ldescription}
\end{Arguments}
\begin{Author}\relax
Diego Diez
\end{Author}
\begin{Examples}
\begin{ExampleCode}
## Not run: 
    data(codelink.example)
    plotDensities(codelink.example)
## End(Not run)
\end{ExampleCode}
\end{Examples}

