\HeaderA{plotCorrelation}{Plot correlation scatterplot between two arrays}{plotCorrelation}
\keyword{documentation}{plotCorrelation}
\keyword{utilities}{plotCorrelation}
\begin{Description}\relax
Takes a Codelink object as argument and plot Correlation scatterplot
of two arrays.
\end{Description}
\begin{Usage}
\begin{verbatim}
        plotCorrelation(object, x=1, y=2, cutoff=FALSE, label="type", title=NULL, xlim=NULL, ylim=NULL)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{object}] an object of class "Codelink".
\item[\code{x}] array to be used in x axis.
\item[\code{y}] array to be used in y axis.
\item[\code{cutoff}] cutoff used to show fold change.
\item[\code{label}] labels to shown.
\item[\code{title}] The title of the plot.
\item[\code{xlim}] range for the X axis.
\item[\code{ylim}] range for the Y axis.
\end{ldescription}
\end{Arguments}
\begin{Author}\relax
Diego Diez
\end{Author}
\begin{SeeAlso}\relax
\code{\LinkA{plot}{plot}}
\end{SeeAlso}
\begin{Examples}
\begin{ExampleCode}
## Not run: 
    data(codelink.example)
    plotCorrelation(codelink.example)
## End(Not run)
\end{ExampleCode}
\end{Examples}

