\HeaderA{Codelink-class}{Class Codelink}{Codelink.Rdash.class}
\aliasA{show,Codelink-method}{Codelink-class}{show,Codelink.Rdash.method}
\aliasA{[,Codelink-method}{Codelink-class}{[,Codelink.Rdash.method}
\keyword{classes}{Codelink-class}
\begin{Description}\relax
This is the storage class for Codelink data
\end{Description}
\begin{Section}{Objects from the Class}
Object are created after reading text codelink files with read.Codelink()
\end{Section}
\begin{Section}{Slots}
\describe{
\item[\code{sample}:] Object of class \code{"character"} containing the sample names
\item[\code{file}:] Object of class \code{"character"} containing the file names
\item[\code{name}:] Object of class \code{"character"} containing the probe ID
\item[\code{method}:] Object of class \code{"list"} containing log information
\item[\code{Smean}:] Object of class \code{"matrix"} containing spot mean intensities
\item[\code{Bmedian}:] Object of class \code{"matrix"} containing background median intensities
\item[\code{Ri}:] Object of class \code{"matrix"} containing raw intensities
\item[\code{Ni}:] Object of class \code{"matrix"} containing normalized intensities
\item[\code{snr}:] Object of class \code{"matrix"} containing signal to noise ratio values
\item[\code{flag}:] Object of class \code{"character"} containing assigned flags
}
\end{Section}
\begin{Section}{Methods}
\describe{
}
\end{Section}
\begin{Note}\relax
More details are cotained in the vignette
\end{Note}
\begin{Author}\relax
Diego Diez
\end{Author}
\begin{Examples}
\begin{ExampleCode}
## Not run: 
    data(codelink.example)
## End(Not run)
\end{ExampleCode}
\end{Examples}

