\HeaderA{SGD.SL}{Interaction data from the Saccharomyces Genome Database}{SGD.SL}
\aliasA{SGD.SynGrowthDefect}{SGD.SL}{SGD.SynGrowthDefect}
\aliasA{SGD.SynRescue}{SGD.SL}{SGD.SynRescue}
\keyword{datasets}{SGD.SL}
\begin{Description}\relax
The Saccharomyces Genome Database (SGD)
provides, for download a table listing all known interactions in
yeast. This table was downloaded on Jan 25, 2007 and three subsets were
extracted. The synthetic lethal interactions, \code{SGD.SL}, the
synthetic grow defect interactions, \code{SGD.SynGrowthDefect} and the
synthetic rescue interactions, \code{SGD.SynRescue}. No other processing
has been done.
\end{Description}
\begin{Usage}
\begin{verbatim}
  data(SGD.SL)
  data(SGD.SynRescue)
  data(SGD.SynGrowthDefect)
\end{verbatim}
\end{Usage}
\begin{Format}\relax
Each data set is a data frame with  the following 7 variables.
\describe{
\item[\code{V1}] Factor, indicating the type of data.
\item[\code{V2}] Factor describing the interaction,
in particular naming bait and prey and interactors.
\item[\code{V3}] Factor indicating whether the cells were
viable.
\item[\code{V4}] Factor which is always NA for these data.
\item[\code{V5}] Factor naming the reference for the interaction.
\item[\code{V6}] Factor with levels indicating the PubMed ID for
the publication in V5.
\item[\code{V7}] Factor with level \code{BioGRID}, probably
indicating the source.
}
\end{Format}
\begin{Details}\relax
SGD says this about the file:
\begin{alltt}
Contains interaction data.  Tab-separated columns are:
1) interaction\_type (mandatory)
2) genes involved and their mutation type, in the format: ORF
(mutation\_type, action), with multiples separated by a | 
3) phenotype (optional, multiples separated by |)
4) description (optional)
5) citation (multiples separated by |)
6) PubMed ID (optional, multiples separated by |)

This file is updated weekly.
\end{alltt}
\end{Details}
\begin{Author}\relax
Z. Jiang
\end{Author}
\begin{Source}\relax
The file can be downloaded from,
\url{ftp://genome-ftp.stanford.edu/pub/yeast/literature_curation}.
\end{Source}
\begin{Examples}
\begin{ExampleCode}
data(SGD.SL)
\end{ExampleCode}
\end{Examples}

