overlap               package:PCpheno               R Documentation

_C_o_u_n_t _t_h_e _n_u_m_b_e_r _o_f _p_r_o_t_e_i_n_s _s_h_a_r_e_d _b_y _p_r_o_t_e_i_n _c_o_m_p_l_e_x_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     Count the number of proteins shared by protein complexes

_U_s_a_g_e:

     overlap(interactome)

_A_r_g_u_m_e_n_t_s:

interactome: Binary matrix composed of genes (rows) and biological
          complexes (columns) (see package _ScISI_)

_V_a_l_u_e:

     The returned value is a data frame with components: 

      C1: Name of the first biological complex

      C2: Name of the second biological complex

nbSharedProt: Number of proteins in common

_A_u_t_h_o_r(_s):

     N. LeMeur

_S_e_e _A_l_s_o:

     _ScISI_

_E_x_a_m_p_l_e_s:

     xx = cbind("a"=c(0,1,1,1),"b"=c(1,1,0,1))
     overlap(xx)

