YEASTOHNOLOG             package:PCpheno             R Documentation

_L_i_s_t _o_f _o_h_n_o_l_o_g _g_e_n_e _p_a_i_r_s _f_r_o_m _B_y_r_n_e, _K._P _a_n_d _W_o_l_f_e, _K._H (_2_0_0_5)

_D_e_s_c_r_i_p_t_i_o_n:

     List of 551 paralogous _Saccharomyces cerevisiae_ gene pairs
     formed by Whole Genome Duplication (WGD) or ohnolog pairs.

_U_s_a_g_e:

     data(YEASTOHNOLOG)

_F_o_r_m_a_t:

     'YEASTOHNOLOG' is a dataframe of 551 paired genes. The first two
     columns are the ohnolog gene pairs (systematic gene names). The
     third column is an index (numeric) of the  rate of sequence
     evolution. The last two columns define the chromosome location.

_D_e_t_a_i_l_s:


     _G_e_n_e_1 _G_e_n_e_2 Systematic gene names of the ohnolog pairs

     _K_a Coefficient that represents the extent of non-synonymous
          sequence divergence between each ohnolog pairs (Yang and
          Nielsen, 2000). The highest is the coefficient the fastest
          the 2 elements of a pair have diverged.

     _C_h_r_G_1 _C_h_r_G_2 Chromosome location of the each element of a pair.
          Note that repeat of the same chromosome locations shared by a
          set of pairs define a block of duplication.

_A_u_t_h_o_r(_s):

     N. LeMeur

_S_o_u_r_c_e:

     Byrne,KP and Wolfe KH (2005), Table2 of supplementary information
     and Scerevisiae_genome.tab file, chromosome location, from YGOB
     <URL: http://wolfe.gen.tcd.ie/ygob/> (last update 03/20/06)

_R_e_f_e_r_e_n_c_e_s:

     Byrne KP, Wolfe KH. (2005) The Yeast Gene Order Browser: combining
     curated homology and syntenic context reveals gene fate in
     polyploid species. Genome Res. 15(10):1456-61.  PMID: 16169922

_E_x_a_m_p_l_e_s:

     data(YEASTOHNOLOG)
     str(YEASTOHNOLOG)

