LesageRaw              package:PCpheno              R Documentation

_D_a_t_a _f_r_o_m _L_e_s_a_g_e _e_t _a_l. _2_0_0_5

_D_e_s_c_r_i_p_t_i_o_n:

     Lesage et al. (2005) assembled a network of 316 interactions among
     163 genes using deletion mutants in CHS1, CHS3, CHS4, CHS5, CHS6,
     CHS7 and BNI4 in a synthetic genetic array analysis.

_U_s_a_g_e:

     data(LesageRaw)

_F_o_r_m_a_t:

     'LesageRaw' is a 5 column dataframe.


     _S_Y_S_T_E_M_A_T_I_C Systematic gene names. NOTE: All mutants are isogenic
          to BY4741 (MATa his3\u0394 leu2\u0394 met15\u0394 ura3\u0394)
          except anp1\u0394 and mnn9\u0394 that are isogenic to BY4742
          (MAT\u03b1 his3\u0394 leu2\u0394 lys2\u0394 ura3\u0394).

     _C_O_M_M_U_N Commun gene names.

     _C_F_W Mutants showing increased, decreased or wild type sensitivity
          to Calcofluor white are scored s, r, or wt, respectively.

     _C_h_i_t_i_n_L_e_v_e_l Chitin level (nmole GlcNAc/mg dry weight). Values are
          an average of at least three independent determinations.
          Values statistically higher and lower than wild type (p <
          0.01) are highlighted in red and green, respectively.

     _C_h_i_t_i_n_L_e_v_e_l._S_D Standard deviation of the average of at least three
          independent determinations of Chitin level.

_A_u_t_h_o_r(_s):

     N. LeMeur

_S_o_u_r_c_e:

     Lesage et al. (2005), supplementary information: <URL:
     http://www.biomedcentral.com/1471-2156/6/8/suppl/S2> or  <URL:
     ftp://genome-ftp.stanford.edu/pub/yeast/systematic_results/phenotypes>

_R_e_f_e_r_e_n_c_e_s:

     Lesage G, Shapiro J, Specht CA, Sdicu AM, Menard P, Hussein S,
     Tong AH, Boone C, Bussey H. (2005) An interactional network of
     genes involved in chitin synthesis in Saccharomyces cerevisiae.BMC
     Genet.6(1):8. PMID: 15715908

_E_x_a_m_p_l_e_s:

     data(LesageRaw)
     str(LesageRaw)

