KEGG2SCISI              package:PCpheno              R Documentation

_M_a_p_p_i_n_g _b_e_t_w_e_e_n _K_E_G_G _a_n_d _S_c_I_S_I

_D_e_s_c_r_i_p_t_i_o_n:

     Count the number of genes shared between a KEGG pathway and a
     protein complex from the ScISI interactome.

_U_s_a_g_e:

     KEGG2SCISI(pw, pc, pcMat, pwMat)

_A_r_g_u_m_e_n_t_s:

      pw: list of pathway names

      pc: list of complex names

   pwMat: pathway incidence matrix

   pcMat: complex incidence matrix

_V_a_l_u_e:

     matrix

_A_u_t_h_o_r(_s):

     N. LeMeur

_S_e_e _A_l_s_o:

     _ScISI_ _KEGG_

_E_x_a_m_p_l_e_s:

     data(ScISIC)
     ## Mapping from Yeast genes to KEGG pathways.
     KeggMat <- PWAmat("org.Sc.sgd")
     KEGG2SCISI(pw = colnames(KeggMat)[1:5], pc = colnames(ScISIC)[1:5], pwMat =
     KeggMat, pcMat =ScISIC)

