LesageRaw {PCpheno} | R Documentation

## Data from Lesage et al. 2005

### Description

Lesage et al. (2005) assembled a network of 316 interactions among 163 genes using deletion mutants in CHS1, CHS3, CHS4, CHS5, CHS6, CHS7 and BNI4 in a synthetic genetic array analysis.

### Usage

    data(LesageRaw)

### Format

`LesageRaw` is a 5 column dataframe.

SYSTEMATIC
  Systematic gene names. NOTE: All mutants are isogenic to BY4741 (MATa his3u0394 leu2u0394 met15u0394 ura3u0394) except anp1u0394 and mnn9u0394 that are isogenic to BY4742 (MATu03b1 his3u0394 leu2u0394 lys2u0394 ura3u0394).
COMMUN
  Commun gene names.
CFW
  Mutants showing increased, decreased or wild type sensitivity to Calcofluor white are scored s, r, or wt, respectively.
ChitinLevel
  Chitin level (nmole GlcNAc/mg dry weight). Values are an average of at least three independent determinations. Values statistically higher and lower than wild type (p < 0.01) are highlighted in red and green, respectively.
ChitinLevel.SD
  Standard deviation of the average of at least three independent determinations of Chitin level.

### Author(s)

N. LeMeur

### Source

Lesage et al. (2005), supplementary information: http://www.biomedcentral.com/1471-2156/6/8/suppl/S2 or ftp://genome-ftp.stanford.edu/pub/yeast/systematic_results/phenotypes

### References

Lesage G, Shapiro J, Specht CA, Sdicu AM, Menard P, Hussein S, Tong AH, Boone C, Bussey H. (2005) An interactional network of genes involved in chitin synthesis in Saccharomyces cerevisiae.BMC Genet.6(1):8. PMID: 15715908

### Examples

    data(LesageRaw)
    str(LesageRaw)

[Package PCpheno version 1.6.0 Index]