cellcycle              package:GraphAT              R Documentation

_C_e_l_l-_C_y_c_l_e _C_l_u_s_t_e_r _M_a_t_r_i_x

_D_e_s_c_r_i_p_t_i_o_n:

     An adjacency matrix in which

_U_s_a_g_e:

     data(ccCM)

_F_o_r_m_a_t:

     'ccCM' is a symmetric matrix with 2885 columns and 2885 rows.

     'nNamescc' is a vector of 2885 gene names.

_D_e_t_a_i_l_s:

     Cho, et al. discuss the k means clustering of 2885 Saccharomyces
     genes into 30 clusters with measurements taken over two
     synchronized cell cycles.  'nNamescc' is a vector of the 2885 gene
     names.  'ccCM' is an adjacency matrix in which a "1" in the ith
     row and jth column indicates that gene i and gene j belong to the
     same cluster.  All other entries are 0.  These data are integrated
     with phenotypic data and GO data in Balasubramanian, et al (2004).

_S_o_u_r_c_e:

     Balasubramanian R, LaFramboise T, Scholtens D, Gentleman R. (2004)
     A graph theoretic approach to integromics - integrating disparate
     sources of functional genomics data

_R_e_f_e_r_e_n_c_e_s:

     Cho, et al. (1998) A genome-wide transcriptional analysis of the
     mitotic cell cycle.  Molecular Cell, 2, 65-73.

     Tavazoie, et al. (1999) Systematic determination of genetic
     network architecture. Nature Genetics, 22, 281-285.

_E_x_a_m_p_l_e_s:

     data(ccCM)

