Phenoclusters            package:GraphAT            R Documentation

_Y_e_a_s_t _G_e_n_e-_K_n_o_c_k_o_u_t _F_i_t_n_e_s_s _D_a_t_a _C_l_u_s_t_e_r _M_e_m_b_e_r_s_h_i_p_s

_D_e_s_c_r_i_p_t_i_o_n:

     This data set contains cluster memberships for yeast genes
     clustered using fitness deficiency scores from gene knockout
     experiments from Giaever et al. Nature (2002). The 3000 most
     variable genes were clustered using k-means with 30 clusters

_U_s_a_g_e:

     data(Phenoclusters)

_F_o_r_m_a_t:

     A matrix whose rows are the 3000 genes and whose two columns are
     gene name and cluster membership number.

_S_o_u_r_c_e:

     <URL: http://gobi.lbl.gov/YeastFitnessData>

_R_e_f_e_r_e_n_c_e_s:

     Giaever, G. et al. 2002 ``Functional profiling of the
     Saccharomyces cerevisiae genome.'' Nature *418*, 387-391.

_E_x_a_m_p_l_e_s:

     data(Phenoclusters)

     ## Compute the adjacency matrix for the corresponding cluster graph:
     phenoMat<-clust2Mat(Phenoclusters[,2])

