cellcycle {GraphAT} | R Documentation

## Cell-Cycle Cluster Matrix

### Description

An adjacency matrix in which

### Usage

    data(ccCM)

### Format

`ccCM` is a symmetric matrix with 2885 columns and 2885 rows.

`nNamescc` is a vector of 2885 gene names.

### Details

Cho, et al. discuss the k means clustering of 2885 Saccharomyces genes into 30 clusters with measurements taken over two synchronized cell cycles. `nNamescc` is a vector of the 2885 gene names. `ccCM` is an adjacency matrix in which a "1" in the ith row and jth column indicates that gene i and gene j belong to the same cluster. All other entries are 0. These data are integrated with phenotypic data and GO data in Balasubramanian, et al (2004).

### Source

Balasubramanian R, LaFramboise T, Scholtens D, Gentleman R. (2004) A graph theoretic approach to integromics - integrating disparate sources of functional genomics data

### References

Cho, et al. (1998) A genome-wide transcriptional analysis of the mitotic cell cycle. Molecular Cell, 2, 65-73.

Tavazoie, et al. (1999) Systematic determination of genetic network architecture. Nature Genetics, 22, 281-285.

### Examples

    data(ccCM)

[Package GraphAT version 1.16.0 Index]