CGHbase-package	CGHbase-package
avedist	avedist
avedist,cghRegions-method	class.cghRegions
bpend	chromosomes
bpend,cghCall-method	class.cghCall
bpend,cghRaw-method	class.cghRaw
bpend,cghRegions-method	class.cghRegions
bpend,cghSeg-method	class.cghSeg
bpstart	chromosomes
bpstart,cghCall-method	class.cghCall
bpstart,cghRaw-method	class.cghRaw
bpstart,cghRegions-method	class.cghRegions
bpstart,cghSeg-method	class.cghSeg
calls	copynumber
calls,cghCall-method	class.cghCall
calls<-	copynumber
calls<-,cghCall,matrix-method	class.cghCall
CGHbase	CGHbase-package
cghCall	class.cghCall
cghCall-class	class.cghCall
cghRaw	class.cghRaw
cghRaw-class	class.cghRaw
cghRegions	class.cghRegions
cghRegions-class	class.cghRegions
cghSeg	class.cghSeg
cghSeg-class	class.cghSeg
chromosomes	chromosomes
chromosomes,cghCall-method	class.cghCall
chromosomes,cghRaw-method	class.cghRaw
chromosomes,cghRegions-method	class.cghRegions
chromosomes,cghSeg-method	class.cghSeg
class:cghCall	class.cghCall
class:cghRaw	class.cghRaw
class:cghRegions	class.cghRegions
class:cghSeg	class.cghSeg
copynumber	copynumber
copynumber,cghCall-method	class.cghCall
copynumber,cghRaw-method	class.cghRaw
copynumber,cghSeg-method	class.cghSeg
copynumber<-	copynumber
copynumber<-,cghCall,matrix-method	class.cghCall
copynumber<-,cghRaw,matrix-method	class.cghRaw
copynumber<-,cghSeg,matrix-method	class.cghSeg
frequencyPlot	frequencyPlot
frequencyPlot,cghRegions,missing-method	class.cghRegions
initialize,cghCall-method	class.cghCall
initialize,cghRaw-method	class.cghRaw
initialize,cghRegions-method	class.cghRegions
initialize,cghSeg-method	class.cghSeg
nclone	avedist
nclone,cghRegions-method	class.cghRegions
plot.cghCall	plot
plot.cghCall,cghCall,missing-method	class.cghCall
plot.cghRaw	plot
plot.cghRaw,cghRaw,missing-method	class.cghRaw
plot.cghRegions	plot
plot.cghRegions,cghRegions,missing-method	class.cghRegions
plot.cghSeg	plot
plot.cghSeg,cghSeg,missing-method	class.cghSeg
probamp	probloss
probamp,cghCall-method	class.cghCall
probamp<-	probloss
probamp<-,cghCall,matrix-method	class.cghCall
probgain	probloss
probgain,cghCall-method	class.cghCall
probgain<-	probloss
probgain<-,cghCall,matrix-method	class.cghCall
probloss	probloss
probloss,cghCall-method	class.cghCall
probloss<-	probloss
probloss<-,cghCall,matrix-method	class.cghCall
probnorm	probloss
probnorm,cghCall-method	class.cghCall
probnorm<-	probloss
probnorm<-,cghCall,matrix-method	class.cghCall
regions	regions
regions,cghRegions-method	class.cghRegions
regions<-	regions
regions<-,cghRegions,matrix-method	class.cghRegions
segmented	copynumber
segmented,cghCall-method	class.cghCall
segmented,cghSeg-method	class.cghSeg
segmented<-	copynumber
segmented<-,cghCall,matrix-method	class.cghCall
segmented<-,cghSeg,matrix-method	class.cghSeg
summaryPlot	summaryPlot
summaryPlot,cghCall,missing-method	class.cghCall
WiltingCalled	WiltingCalled
WiltingData	WiltingData
WiltingNorm	WiltingNorm
WiltingRaw	WiltingRaw
WiltingRegions	WiltingRegions
WiltingSeg	WiltingSeg
