\HeaderA{probloss}{Retrieve call probabilities from a cghCall object.}{probloss}
\aliasA{probamp}{probloss}{probamp}
\aliasA{probamp<\Rdash}{probloss}{probamp<.Rdash.}
\aliasA{probgain}{probloss}{probgain}
\aliasA{probgain<\Rdash}{probloss}{probgain<.Rdash.}
\aliasA{probloss<\Rdash}{probloss}{probloss<.Rdash.}
\aliasA{probnorm}{probloss}{probnorm}
\aliasA{probnorm<\Rdash}{probloss}{probnorm<.Rdash.}
\keyword{manip}{probloss}
\begin{Description}\relax
These generic functions access the call probabilities from assay data
stored in a object derived from the \code{\LinkA{cghCall-class}{cghCall.Rdash.class}}.
\end{Description}
\begin{Usage}
\begin{verbatim}
probloss(object)
probloss(object) <- value
probnorm(object)
probnorm(object) <- value
probgain(object)
probgain(object) <- value
probamp(object)
probamp(object) <- value
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{object}] Object derived from class \code{cghCall}
\item[\code{value}] Matrix with rows representing features and columns samples.
\end{ldescription}
\end{Arguments}
\begin{Value}
These functions return matrices of call probabilities.
\end{Value}
\begin{Author}\relax
Sjoerd Vosse
\end{Author}
\begin{SeeAlso}\relax
\code{\LinkA{cghCall-class}{cghCall.Rdash.class}}
\end{SeeAlso}

